C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TNF receptor associated factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000017530 Traf4-001 ENSMUSG00000017386 10090 - 11:78159400-78165589 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017530
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017530 9.662±7.14 32.674±3.32 10.639±2.06 43.140±44.48 8.093±3.39 36.725±17.15 4.056±0.92 30.445±14.77 21.141±7.89 9.018±4.98 1.203±0.32 25.784±16.03 16.481±5.92 3.253±1.23

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005164 IEA tumor necrosis factor receptor binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0005923 IEA tight junction
GO:0006915 IEA apoptotic process
GO:0007250 IEA activation of NF-kappaB-inducing kinase activity
GO:0007585 IMP respiratory gaseous exchange
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0019901 IPI protein kinase binding
GO:0030323 IMP respiratory tube development
GO:0031625 IEA ubiquitin protein ligase binding
GO:0031996 IEA thioesterase binding
GO:0042981 IEA regulation of apoptotic process
GO:0045860 ISS positive regulation of protein kinase activity
GO:0046330 ISS positive regulation of JNK cascade
GO:0050699 IEA WW domain binding
GO:0090073 IEA positive regulation of protein homodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000056878 traf4b-001 protein_coding Danio_rerio 4.2039e-45 187
ENST00000262395 TRAF4-001 protein_coding Homo_sapiens 0 2220
ENST00000262396 TRAF4-010 protein_coding Homo_sapiens 0 651
ENST00000394925 TRAF4-006 retained_intron Homo_sapiens 0 379
ENST00000422344 TRAF4-002 protein_coding Homo_sapiens 0 699
ENST00000444415 TRAF4-009 protein_coding Homo_sapiens 0 1554
ENST00000454852 TRAF4-019 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000461195 TRAF4-008 retained_intron Homo_sapiens 0 553
ENST00000469529 TRAF4-007 retained_intron Homo_sapiens 0 806
ENST00000473421 TRAF4-004 protein_coding Homo_sapiens 0 586
ENST00000475329 TRAF4-003 nonsense_mediated_decay Homo_sapiens 0 398
ENST00000478021 TRAF4-005 nonsense_mediated_decay Homo_sapiens 0 329
ENST00000498540 TRAF4-014 retained_intron Homo_sapiens 0 374
ENST00000502593 CTB-70D19.1-001 processed_pseudogene Homo_sapiens 0 521
ENST00000578917 TRAF4-017 retained_intron Homo_sapiens 1e-34 150
ENST00000580073 TRAF4-018 retained_intron Homo_sapiens 0 440
ENST00000584944 TRAF4-016 protein_coding Homo_sapiens 0 442
ENST00000586813 TRAF4-020 nonsense_mediated_decay Homo_sapiens 0 985
ENST00000618771 TRAF4-201 protein_coding Homo_sapiens 0 383

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