C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras-related GTP binding B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262850 RRAGB-001 ENSG00000083750 9606 + X:55717885-55758348 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartKidneyLiverMuscleOvaryPlacentaENST00000262850
Transcript ID Adipose Brain Heart Kidney Liver Muscle Ovary Placenta
ENST00000262850 0.650±0.00 5.120±2.08 0.639±0.49 1.886±0.00 0.566±0.34 0.837±0.00 0.565±0.00 0.705±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057B CIL_00057B_0001 CGP X:55623400-55758774
CIL_0006LJ CIL_0006LJ_0001 CGP X:55717739-56287889

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 IDA:IEA GTP binding
GO:0005634 IEA nucleus
GO:0005737 IDA:IEA cytoplasm
GO:0005764 IDA lysosome
GO:0005765 IDA lysosomal membrane
GO:0005794 IDA Golgi apparatus
GO:0007264 IEA small GTPase mediated signal transduction
GO:0032008 IMP positive regulation of TOR signaling
GO:0032561 IDA guanyl ribonucleotide binding
GO:0034613 IMP cellular protein localization
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0071230 IMP cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039720 Rragb-001 protein_coding Mus_musculus 0 1655
ENSMUST00000144175 Rragb-002 protein_coding Mus_musculus 0 337
ENSMUST00000091064 Rraga-001 protein_coding Mus_musculus 4e-29 134

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