C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calponin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263097 CNN2-001 ENSG00000064666 9606 + 19:1026581-1039068 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263097
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263097 24.677±0.00 16.439±0.00 4.992±0.00 23.945±20.48 1.258±0.00 8.183±5.50 9.970±9.14 9.411±0.00 82.052±78.24 5.780±0.00 73.516±48.78 19.272±7.00 4.222±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_0000I1 CIL_0000I1_0001 CGP 19:1009648-1039068
CIL_0000I2 CIL_0000I2_0001 CGP 19:1026581-1065572

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005856 TAS cytoskeleton
GO:0005911 TAS cell-cell junction
GO:0005925 IDA focal adhesion
GO:0007010 TAS cytoskeleton organization
GO:0010628 IEA positive regulation of gene expression
GO:0016020 IDA membrane
GO:0030097 IEA hemopoiesis
GO:0030336 IEA negative regulation of cell migration
GO:0031032 IEA actomyosin structure organization
GO:0032970 IDA regulation of actin filament-based process
GO:0042060 IEA wound healing
GO:0042127 IEA regulation of cell proliferation
GO:0050765 IEA negative regulation of phagocytosis
GO:0070062 IDA extracellular vesicular exosome
GO:0071260 IDA cellular response to mechanical stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004784 Cnn2-001 protein_coding Mus_musculus 0 1118
ENSMUST00000105374 Cnn2-002 protein_coding Mus_musculus 0 527

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