C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calponin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000004784 Cnn2-001 ENSMUSG00000004665 10090 + 10:79988584-79996062 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004784
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004784 50.029±31.97 16.653±4.89 71.865±6.79 5.942±3.65 75.457±29.49 33.248±7.85 19.041±2.89 19.686±1.70 9.195±6.63 180.593±21.55 1.919±0.36 82.102±33.98 72.014±16.54 2.287±1.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_0000I1 CIL_0000I1_0002 CGP 10:79974948-79996062
CIL_0000I2 CIL_0000I2_0002 CGP 10:79988584-80015572

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 ISO stress fiber
GO:0003779 IEA actin binding
GO:0005516 IEA calmodulin binding
GO:0005925 IEA focal adhesion
GO:0010628 IMP positive regulation of gene expression
GO:0016020 IEA membrane
GO:0030097 IMP hemopoiesis
GO:0030336 IMP negative regulation of cell migration
GO:0031032 IEA actomyosin structure organization
GO:0032970 ISO regulation of actin filament-based process
GO:0042060 IMP wound healing
GO:0042127 IMP regulation of cell proliferation
GO:0050765 IMP negative regulation of phagocytosis
GO:0070062 IEA extracellular vesicular exosome
GO:0071260 ISO cellular response to mechanical stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263097 CNN2-001 protein_coding Homo_sapiens 0 1118
ENST00000348419 CNN2-003 protein_coding Homo_sapiens 0 527
ENST00000417134 CNN2P9-001 processed_pseudogene Homo_sapiens 0 900
ENST00000439038 CNN2P6-001 processed_pseudogene Homo_sapiens 0 878
ENST00000443067 CNN2P10-001 processed_pseudogene Homo_sapiens 0 713
ENST00000453616 CNN2P1-001 processed_pseudogene Homo_sapiens 0 800
ENST00000529222 RP11-259P6.3-001 processed_pseudogene Homo_sapiens 0 553
ENST00000562015 CNN2-007 protein_coding Homo_sapiens 0 422
ENST00000562075 CNN2-006 protein_coding Homo_sapiens 0 472
ENST00000562089 RP11-615I2.3-001 processed_pseudogene Homo_sapiens 0 856
ENST00000562958 CNN2-005 protein_coding Homo_sapiens 0 595
ENST00000564572 CNN2-011 retained_intron Homo_sapiens 0 250
ENST00000565096 CNN2-004 protein_coding Homo_sapiens 0 595
ENST00000566695 CNN2-008 protein_coding Homo_sapiens 0 937
ENST00000568865 CNN2-009 protein_coding Homo_sapiens 0 689
ENST00000569352 CNN2-013 nonsense_mediated_decay Homo_sapiens 0 529
ENST00000606983 CNN2-014 protein_coding Homo_sapiens 0 571
ENST00000607102 CNN2-010 protein_coding Homo_sapiens 0 211

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