C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263708 PTPN4-001 ENSG00000088179 9606 + 2:119759631-119983818 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263708
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263708 0.390±0.00 0.219±0.00 1.646±0.00 1.160±0.00 1.151±0.35 1.169±0.51 0.923±0.06 0.754±0.23 0.452±0.27 3.221±0.00 0.376±0.13 1.561±1.29 0.386±0.04 0.804±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093M CIL_00093M_0001 VISTA 2:119187057-119791464

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0004726 IEA non-membrane spanning protein tyrosine phosphatase activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006470 TAS:IEA protein dephosphorylation
GO:0008092 IEA cytoskeletal protein binding
GO:0009898 IDA cytoplasmic side of plasma membrane
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0035335 IEA peptidyl-tyrosine dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064091 Ptpn4-001 protein_coding Mus_musculus 0 5000
ENSMUST00000163435 Ptpn4-002 protein_coding Mus_musculus 0 2410
ENSMUST00000166624 Ptpn4-003 nonsense_mediated_decay Mus_musculus 0 1995
ENSMUST00000163179 Ptpn4-010 nonsense_mediated_decay Mus_musculus 0 808
ENSMUST00000164086 Ptpn4-011 protein_coding Mus_musculus 0 534
ENSDART00000000670 ptpn4a-201 protein_coding Danio_rerio 0 523
ENSDART00000078823 ptpn4a-001 protein_coding Danio_rerio 0 523
ENSMUST00000163621 Ptpn4-006 protein_coding Mus_musculus 0 435
ENSMUST00000166422 Ptpn4-005 nonsense_mediated_decay Mus_musculus 0 433
ENSMUST00000168808 Ptpn4-007 retained_intron Mus_musculus 0 414
ENSMUST00000164269 Ptpn4-008 nonsense_mediated_decay Mus_musculus 0 379
ENSMUST00000168429 Ptpn4-009 protein_coding Mus_musculus 0 320
ENSMUST00000168303 Ptpn4-004 protein_coding Mus_musculus 0 281

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