C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, non-receptor type 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000064091 Ptpn4-001 ENSMUSG00000026384 10090 - 1:119652467-119837613 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064091
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064091 1.983±0.30 0.938±0.38 0.368±0.01 5.851±0.08 2.067±0.60 0.464±0.08 1.344±0.41 1.378±0.64 0.618±0.42 2.585±0.45 0.760±0.29 1.970±0.85 1.011±0.32 2.156±0.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WE CIL_0003WE_0002 CGP 1:119545037-119837613
CIL_0001TM CIL_0001TM_0002 CGP 1:119652467-119913208

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004726 IDA non-membrane spanning protein tyrosine phosphatase activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008092 IEA cytoskeletal protein binding
GO:0009898 IEA cytoplasmic side of plasma membrane
GO:0035335 IEA peptidyl-tyrosine dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263708 PTPN4-001 protein_coding Homo_sapiens 0 5000
ENST00000420482 PTPN4-011 protein_coding Homo_sapiens 0 350
ENST00000430976 PTPN4-002 nonsense_mediated_decay Homo_sapiens 0 2985
ENST00000431283 PTPN4-010 protein_coding Homo_sapiens 0 628
ENST00000433888 PTPN4-005 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000441089 PTPN4-008 protein_coding Homo_sapiens 0 782
ENST00000460289 PTPN4-003 processed_transcript Homo_sapiens 0 636
ENST00000469511 PTPN4-007 retained_intron Homo_sapiens 0 652
ENST00000485247 PTPN4-004 processed_transcript Homo_sapiens 0 636
ENST00000488279 PTPN4-012 protein_coding Homo_sapiens 0 676
ENST00000488896 PTPN4-006 retained_intron Homo_sapiens 0 337

Loading