C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, non-receptor type 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163435 Ptpn4-002 ENSMUSG00000026384 10090 - 1:119689801-119837347 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000163435
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000163435 5.180±1.56 5.264±1.94 1.667±0.65 1.009±0.00 0.521±0.10 1.966±0.21 4.504±2.03 0.874±0.00 4.898±2.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WE CIL_0003WE_0002 CGP 1:119545037-119837613
CIL_0001TM CIL_0001TM_0002 CGP 1:119652467-119913208

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004726 IDA non-membrane spanning protein tyrosine phosphatase activity
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008092 IEA cytoskeletal protein binding
GO:0019898 IEA extrinsic component of membrane
GO:0035335 IDA peptidyl-tyrosine dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263708 PTPN4-001 protein_coding Homo_sapiens 0 2410
ENST00000420482 PTPN4-011 protein_coding Homo_sapiens 0 350
ENST00000430976 PTPN4-002 nonsense_mediated_decay Homo_sapiens 0 1083
ENST00000431283 PTPN4-010 protein_coding Homo_sapiens 0 627
ENST00000433888 PTPN4-005 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000460289 PTPN4-003 processed_transcript Homo_sapiens 0 636
ENST00000485247 PTPN4-004 processed_transcript Homo_sapiens 0 636
ENST00000488279 PTPN4-012 protein_coding Homo_sapiens 0 676
ENST00000488896 PTPN4-006 retained_intron Homo_sapiens 0 337

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