C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263904 STAM2-001 ENSG00000115145 9606 - 2:152116801-152175992 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263904
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263904 4.514±0.00 2.142±0.00 2.110±0.00 1.838±0.74 3.374±0.33 3.436±0.76 2.522±0.56 2.918±0.35 2.722±2.41 2.677±2.29 1.883±0.80 3.430±1.44 2.410±0.20 5.102±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E3 CIL_0007E3_0001 CGP 2:151832776-152175992
CIL_0007E6 CIL_0007E6_0001 CGP 2:152116801-152649834

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0005829 TAS cytosol
GO:0006886 IEA intracellular protein transport
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0016020 IEA membrane
GO:0016197 TAS endosomal transport
GO:0042059 TAS negative regulation of epidermal growth factor receptor signaling pathway
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102759 Stam2-001 protein_coding Mus_musculus 0 1748
ENSMUST00000127316 Stam2-002 protein_coding Mus_musculus 0 1118
ENSMUST00000150582 Stam2-003 retained_intron Mus_musculus 0 948
ENSMUST00000155516 Stam2-005 nonsense_mediated_decay Mus_musculus 0 802
ENSMUST00000138290 Stam2-004 protein_coding Mus_musculus 0 327

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