C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007E3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000182389-ENSG00000115145 CGP 9606 2:151832776-152175992
GeneTranscriptPositionBiotype
ENSG00000115145 (STAM2)
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 		ENST00000263904 (STAM2-001) 152116801-152175992 protein_coding
ENST00000463854 (STAM2-002) 152131882-152175749 retained_intron
ENST00000465460 (STAM2-006) 152143897-152150206 processed_transcript
ENST00000482997 (STAM2-004) 152126004-152175729 retained_intron
ENST00000489389 (STAM2-003) 152120432-152124686 retained_intron
ENST00000494589 (STAM2-005) 152143989-152175741 retained_intron
ENSG00000182389 (CACNB4)
calcium channel, voltage-dependent, beta 4 subunit 		ENST00000201943 (CACNB4-004) 151839114-152099023 protein_coding
ENST00000360283 (CACNB4-201) 151838927-151973935 protein_coding
ENST00000397327 (CACNB4-002) 151838684-151973940 protein_coding
ENST00000427385 (CACNB4-005) 151838814-152098721 protein_coding
ENST00000434468 (CACNB4-009) 151876480-151971988 protein_coding
ENST00000439467 (CACNB4-006) 151838614-152098461 protein_coding
ENST00000470066 (CACNB4-007) 151865761-151973720 retained_intron
ENST00000475848 (CACNB4-008) 151883297-151973971 processed_transcript
ENST00000534999 (CACNB4-003) 151838626-151973940 protein_coding
ENST00000539935 (CACNB4-001) 151832776-152099079 protein_coding
ENSG00000234272 (RPL30P2)
ribosomal protein L30 pseudogene 2 		ENST00000414021 (RPL30P2-001) 152131555-152131845 processed_pseudogene
CIL_0007E3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000017412-ENSMUSG00000055371 CGP 10090 2:52428320-52742281
GeneTranscriptPositionBiotype
ENSMUSG00000017412 (Cacnb4)
calcium channel, voltage-dependent, beta 4 subunit 		ENSMUST00000078324 (Cacnb4-002) 52428325-52676831 protein_coding
ENSMUST00000102760 (Cacnb4-001) 52428325-52558560 protein_coding
ENSMUST00000102761 (Cacnb4-003) 52428325-52558567 protein_coding
ENSMUST00000132322 (Cacnb4-004) 52556187-52556709 processed_transcript
ENSMUST00000148837 (Cacnb4-005) 52675727-52676143 processed_transcript
ENSMUST00000178799 (Cacnb4-201) 52428320-52676582 protein_coding
ENSMUSG00000025201 (Bloc1s2-ps)
biogenesis of lysosomal organelles complex-1, subunit 2, pseudogene 		ENSMUST00000183232 (Bloc1s2-ps-001) 52619754-52620185 processed_pseudogene
ENSMUSG00000055371 (Stam2)
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 		ENSMUST00000102759 (Stam2-001) 52691664-52742200 protein_coding
ENSMUST00000127316 (Stam2-002) 52699502-52742281 protein_coding
ENSMUST00000138290 (Stam2-004) 52719714-52742156 protein_coding
ENSMUST00000150582 (Stam2-003) 52709397-52742180 retained_intron
ENSMUST00000155516 (Stam2-005) 52709679-52742190 nonsense_mediated_decay
ENSMUSG00000082132 (Gm13541)
predicted gene 13541 		ENSMUST00000119519 (Gm13541-001) 52551969-52552251 processed_pseudogene
ENSMUSG00000085315 (A430018G15Rik)
RIKEN cDNA A430018G15 gene 		ENSMUST00000124210 (A430018G15Rik-002) 52425012-52431893 processed_transcript
ENSMUST00000143821 (A430018G15Rik-001) 52425012-52434885 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007E3_0001ENSG00000115145ENST00000263904ENST00000463854ENST00000465460ENST00000482997ENST00000489389ENST00000494589ENSG00000182389ENST00000201943ENST00000360283ENST00000397327ENST00000427385ENST00000434468ENST00000439467ENST00000470066ENST00000475848ENST00000534999ENST00000539935ENSG00000234272ENST00000414021CIL_0007E3_0002ENSMUSG00000017412ENSMUST00000078324ENSMUST00000102760ENSMUST00000102761ENSMUST00000132322ENSMUST00000148837ENSMUST00000178799ENSMUSG00000025201ENSMUST00000183232ENSMUSG00000055371ENSMUST00000102759ENSMUST00000127316ENSMUST00000138290ENSMUST00000150582ENSMUST00000155516ENSMUSG00000082132ENSMUST00000119519ENSMUSG00000085315ENSMUST00000124210ENSMUST00000143821
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007E3_0001ENSG00000115145ENST00000263904ENST00000463854ENST00000482997ENST00000494589ENSG00000182389ENST00000201943ENST00000427385ENST00000439467ENST00000470066ENST00000475848ENST00000539935ENSG00000234272ENST00000414021CIL_0007E3_0002ENSMUSG00000017412ENSMUST00000078324ENSMUST00000102760ENSMUST00000102761ENSMUST00000148837ENSMUST00000178799ENSMUSG00000025201ENSMUST00000183232ENSMUSG00000055371ENSMUST00000102759ENSMUST00000127316ENSMUST00000150582ENSMUST00000155516ENSMUSG00000082132ENSMUST00000119519ENSMUSG00000085315ENSMUST00000124210ENSMUST00000143821
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115145 ENST00000263904 4.514±0.00 2.142±0.00 2.110±0.00 1.838±0.74 3.374±0.33 3.436±0.76 2.522±0.56 2.918±0.35 2.722±2.41 2.677±2.29 1.883±0.80 3.430±1.44 2.410±0.20 5.102±0.80
ENST00000463854 N/A N/A 3.855±0.00 2.443±0.00 N/A 3.499±0.00 N/A N/A N/A N/A N/A 4.800±0.00 N/A N/A
ENST00000465460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482997 N/A N/A N/A 1.861±0.00 3.152±0.00 N/A 1.051±0.00 N/A 3.917±0.00 6.509±0.00 0.502±0.00 2.125±0.00 3.093±0.00 22.087±0.00
ENST00000489389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494589 N/A N/A N/A N/A N/A N/A N/A 5.876±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000182389 ENST00000201943 N/A N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A 0.126±0.00 N/A
ENST00000360283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A N/A N/A
ENST00000434468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439467 N/A N/A N/A N/A N/A N/A 0.124±0.00 N/A N/A N/A N/A 0.154±0.00 0.080±0.00 N/A
ENST00000470066 0.026±0.00 0.051±0.00 0.207±0.00 N/A 0.118±0.04 N/A 0.018±0.00 N/A 0.019±0.00 0.213±0.14 N/A 0.064±0.00 0.021±0.00 N/A
ENST00000475848 N/A N/A N/A N/A N/A 0.742±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539935 0.026±0.00 N/A N/A 3.611±1.49 0.089±0.00 N/A N/A 0.608±0.00 0.007±0.00 N/A N/A 0.047±0.00 0.030±0.00 0.381±0.00
ENSG00000234272 ENST00000414021 0.088±0.00 0.228±0.00 N/A 0.090±0.00 N/A 0.166±0.00 0.832±0.67 0.953±0.64 N/A N/A N/A N/A N/A 0.055±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017412 ENSMUST00000078324 0.056±0.01 N/A N/A N/A N/A N/A N/A 0.318±0.03 0.058±0.00 N/A N/A 0.330±0.00 N/A 0.065±0.01
ENSMUST00000102760 0.198±0.17 0.106±0.04 0.124±0.00 2.745±0.44 0.220±0.11 0.124±0.01 0.077±0.04 0.182±0.00 0.169±0.05 0.198±0.00 N/A 0.094±0.02 0.059±0.04 0.135±0.02
ENSMUST00000102761 0.100±0.00 N/A N/A 1.577±0.45 0.241±0.00 0.121±0.03 N/A N/A 0.046±0.01 N/A 0.073±0.00 0.288±0.15 0.032±0.00 0.098±0.02
ENSMUST00000132322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.635±15.53 N/A N/A
ENSMUST00000178799 0.161±0.09 0.109±0.03 0.328±0.22 1.099±0.55 0.083±0.01 0.077±0.01 N/A 0.420±0.00 0.084±0.03 N/A 0.092±0.03 0.357±0.17 0.061±0.04 N/A
ENSMUSG00000025201 ENSMUST00000183232 0.648±0.00 N/A 0.368±0.29 0.926±0.01 1.151±0.83 0.446±0.23 0.315±0.20 0.190±0.06 0.497±0.26 0.232±0.09 0.236±0.08 0.700±0.47 0.324±0.11 0.542±0.08
ENSMUSG00000055371 ENSMUST00000102759 7.257±1.75 11.665±1.56 2.389±0.18 6.634±2.99 5.538±1.51 13.133±1.23 1.977±1.58 4.845±1.82 2.880±0.72 7.917±0.18 1.557±0.52 9.679±3.22 5.576±2.15 7.425±2.79
ENSMUST00000127316 N/A N/A N/A 2.473±0.00 N/A N/A N/A N/A N/A N/A N/A 3.280±0.00 8.647±1.07 8.112±4.86
ENSMUST00000138290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.717±0.00 6.481±2.30 11.304±0.00
ENSMUST00000155516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.605±0.00 N/A
ENSMUSG00000082132 ENSMUST00000119519 N/A N/A 0.134±0.00 2.511±2.72 N/A N/A N/A 0.614±0.23 0.253±0.00 N/A 0.308±0.05 0.475±0.10 N/A 0.326±0.03
ENSMUSG00000085315 ENSMUST00000124210 N/A N/A N/A N/A N/A 0.272±0.12 N/A N/A 0.196±0.00 N/A N/A N/A N/A N/A
ENSMUST00000143821 N/A 0.198±0.07 N/A N/A 0.532±0.17 0.486±0.00 N/A N/A 0.462±0.16 0.240±0.06 0.582±0.37 1.097±0.78 0.176±0.00 0.638±0.09

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