C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036439 Cdh6-201 ENSMUSG00000039385 10090 - 15:13034200-13173639 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036439
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036439 0.302±0.25 2.292±1.14 1.111±0.00 0.062±0.03 0.424±0.10 0.117±0.04 1.327±0.77 0.036±0.02 0.353±0.06 0.027±0.01 0.511±0.13 0.144±0.08 0.054±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MJ CIL_0006MJ_0005 CGP 15:13034200-16857094

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IDA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264463 CDH10-001 protein_coding Homo_sapiens 0 490
ENST00000265071 CDH6-001 protein_coding Homo_sapiens 0 3267
ENST00000504835 CDH6-005 retained_intron Homo_sapiens 0 643
ENST00000508132 CDH6-004 retained_intron Homo_sapiens 0 660
ENST00000510477 CDH10-002 nonsense_mediated_decay Homo_sapiens 0 490
ENST00000514738 CDH6-003 protein_coding Homo_sapiens 0 2593

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