C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: arrestin domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265138 ARRDC3-001 ENSG00000113369 9606 - 5:91368724-91383359 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265138
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265138 20.934±0.00 4.283±0.00 17.481±0.00 6.426±0.34 21.810±3.78 17.427±7.55 3.106±0.78 17.533±0.87 12.459±8.24 29.363±0.85 13.629±6.83 17.260±13.45 8.024±3.70 4.752±2.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KI CIL_0005KI_0002 CGP 5:90529344-91383359
CIL_0007Q4 CIL_0007Q4_0001 VISTA 5:91172553-91772553
CIL_0008R6 CIL_0008R6_0001 VISTA 5:91189946-91791350
CIL_0008SQ CIL_0008SQ_0001 VISTA 5:91332795-91933409

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001659 IEA temperature homeostasis
GO:0005515 IPI protein binding
GO:0005768 IDA endosome
GO:0005886 IDA plasma membrane
GO:0031651 IEA negative regulation of heat generation
GO:0031699 IDA beta-3 adrenergic receptor binding
GO:0043588 IEA skin development
GO:0044252 IEA negative regulation of multicellular organismal metabolic process
GO:0051443 IPI positive regulation of ubiquitin-protein transferase activity
GO:0060613 IEA fat pad development
GO:0071879 IEA positive regulation of adrenergic receptor signaling pathway
GO:0090327 IEA negative regulation of locomotion involved in locomotory behavior

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099356 Arrdc3-001 protein_coding Mus_musculus 0 2558
ENSMUST00000161441 Arrdc3-003 protein_coding Mus_musculus 0 1831
ENSMUST00000159690 Arrdc3-002 nonsense_mediated_decay Mus_musculus 0 1812
ENSMUST00000159090 Arrdc3-004 retained_intron Mus_musculus 0 898
ENSDART00000074592 arrdc3a-001 protein_coding Danio_rerio 0 767
ENSMUST00000162904 Arrdc3-006 retained_intron Mus_musculus 0 725
ENSMUST00000159856 Arrdc3-005 retained_intron Mus_musculus 0 680

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