C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008SQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs269 VISTA 9606 5:91332795-91933409
GeneTranscriptPositionBiotype
ENSG00000113369 (ARRDC3)
arrestin domain containing 3 		ENST00000265138 (ARRDC3-001) 91368724-91383359 protein_coding
ENST00000503192 (ARRDC3-008) 91375527-91380151 processed_transcript
ENST00000505631 (ARRDC3-004) 91374225-91375344 retained_intron
ENST00000507075 (ARRDC3-002) 91376559-91382875 retained_intron
ENST00000508948 (ARRDC3-006) 91375521-91381020 processed_transcript
ENST00000511391 (ARRDC3-005) 91370798-91373845 retained_intron
ENST00000514284 (ARRDC3-010) 91375000-91380089 processed_transcript
ENSG00000240388 (CTD-2061E19.1)
 ENST00000495909 (CTD-2061E19.1-001) 91354478-91354934 processed_pseudogene
ENSG00000241059 (CTD-2061E19.6)
 ENST00000484429 (CTD-2061E19.6-001) 91355380-91356026 antisense
ENSG00000248826 (PCBP2P3)
poly(rC) binding protein 2 pseudogene 3 		ENST00000509726 (PCBP2P3-001) 91843687-91844529 processed_pseudogene
ENSG00000251356 (RAB5CP2)
RAB5C, member RAS oncogene family pseudogene 2 		ENST00000505368 (RAB5CP2-001) 91476382-91477018 processed_pseudogene
ENSG00000276426 (uc_338)
TUC338 		ENST00000621804 (uc_338.1-215) 91844022-91844116 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0008SQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs269 VISTA 10090 13:80322907-80923514
GeneTranscriptPositionBiotype
ENSMUSG00000074794 (Arrdc3)
arrestin domain containing 3 		ENSMUST00000099356 (Arrdc3-001) 80883410-80896029 protein_coding
ENSMUST00000159090 (Arrdc3-004) 80883384-80889643 retained_intron
ENSMUST00000159690 (Arrdc3-002) 80883410-80896035 nonsense_mediated_decay
ENSMUST00000159856 (Arrdc3-005) 80890104-80891252 retained_intron
ENSMUST00000161441 (Arrdc3-003) 80886095-80894320 protein_coding
ENSMUST00000162904 (Arrdc3-006) 80890518-80891642 retained_intron
ENSMUSG00000089827 (1700023H06Rik)
RIKEN cDNA 1700023H06 gene 		ENSMUST00000161006 (1700023H06Rik-001) 80884224-80885524 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008SQ_0001ENSG00000113369ENST00000265138ENST00000503192ENST00000505631ENST00000507075ENST00000508948ENST00000511391ENST00000514284ENSG00000240388ENST00000495909ENSG00000241059ENST00000484429ENSG00000248826ENST00000509726ENSG00000251356ENST00000505368ENSG00000276426ENST00000621804CIL_0008SQ_0002ENSMUSG00000074794ENSMUST00000099356ENSMUST00000159090ENSMUST00000159690ENSMUST00000159856ENSMUST00000161441ENSMUST00000162904ENSMUSG00000089827ENSMUST00000161006
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008SQ_0001ENSG00000113369ENST00000265138ENSG00000240388ENST00000495909ENSG00000241059ENST00000484429ENSG00000248826ENST00000509726ENSG00000251356ENST00000505368ENSG00000276426ENST00000621804CIL_0008SQ_0002ENSMUSG00000074794ENSMUST00000099356ENSMUST00000159690ENSMUST00000161441ENSMUST00000162904ENSMUSG00000089827ENSMUST00000161006
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113369 ENST00000265138 20.934±0.00 4.283±0.00 17.481±0.00 6.426±0.34 21.810±3.78 17.427±7.55 3.106±0.78 17.533±0.87 12.459±8.24 29.363±0.85 13.629±6.83 17.260±13.45 8.024±3.70 4.752±2.62
ENST00000503192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508948 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514284 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240388 ENST00000495909 0.249±0.00 0.529±0.00 N/A 0.103±0.00 0.270±0.00 0.709±0.00 0.030±0.00 0.198±0.00 0.058±0.00 0.286±0.00 0.692±0.00 N/A N/A 0.267±0.00
ENSG00000241059 ENST00000484429 N/A 0.067±0.00 N/A N/A N/A N/A 0.033±0.00 N/A N/A 0.014±0.00 N/A N/A N/A 0.063±0.00
ENSG00000248826 ENST00000509726 0.016±0.00 N/A N/A N/A 0.016±0.00 0.015±0.00 N/A N/A N/A N/A N/A N/A N/A 0.016±0.00
ENSG00000251356 ENST00000505368 0.051±0.00 N/A 0.097±0.00 N/A 0.215±0.00 0.418±0.00 0.190±0.00 0.055±0.00 N/A N/A N/A 0.486±0.00 N/A 0.059±0.00
ENSG00000276426 ENST00000621804 N/A N/A N/A N/A N/A N/A 0.269±0.00 N/A N/A N/A N/A N/A N/A 0.260±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000074794 ENSMUST00000099356 6.953±1.70 11.724±3.26 7.212±0.24 9.249±4.13 4.845±1.35 4.152±0.90 5.227±1.11 8.295±2.00 14.804±9.46 15.965±1.58 7.715±3.86 8.802±5.69 23.336±6.76 7.598±1.66
ENSMUST00000159090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159690 1.254±0.00 N/A 1.147±0.10 3.075±0.30 1.647±0.45 1.434±0.31 1.296±0.00 1.316±0.00 4.782±2.52 2.745±0.00 0.414±0.00 2.311±0.91 3.053±0.00 4.347±0.00
ENSMUST00000159856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161441 4.052±1.63 6.225±1.82 N/A N/A 4.149±2.35 N/A N/A 3.117±0.52 N/A N/A N/A 7.547±2.25 N/A 11.832±1.76
ENSMUST00000162904 8.950±1.17 9.854±1.15 N/A N/A 10.063±4.04 9.998±2.33 8.962±1.39 13.838±1.85 16.937±0.00 23.254±3.48 N/A 17.665±5.28 N/A N/A
ENSMUSG00000089827 ENSMUST00000161006 0.165±0.01 0.364±0.02 0.072±0.03 0.353±0.13 0.137±0.05 0.127±0.00 0.085±0.04 0.169±0.08 0.278±0.18 0.217±0.07 0.040±0.01 0.422±0.14 0.185±0.14 3.889±3.09

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