C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007Q4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs989 VISTA 9606 5:91172553-91772553
GeneTranscriptPositionBiotype
ENSG00000113369 (ARRDC3)
arrestin domain containing 3 		ENST00000265138 (ARRDC3-001) 91368724-91383359 protein_coding
ENST00000503192 (ARRDC3-008) 91375527-91380151 processed_transcript
ENST00000505631 (ARRDC3-004) 91374225-91375344 retained_intron
ENST00000507075 (ARRDC3-002) 91376559-91382875 retained_intron
ENST00000508948 (ARRDC3-006) 91375521-91381020 processed_transcript
ENST00000511391 (ARRDC3-005) 91370798-91373845 retained_intron
ENST00000514284 (ARRDC3-010) 91375000-91380089 processed_transcript
ENSG00000212930 (RP11-414H23.2)
 ENST00000514239 (RP11-414H23.2-001) 91223419-91223967 lincRNA
ENSG00000234292 (RP11-213H15.1)
 ENST00000440769 (RP11-213H15.1-001) 91280097-91281142 lincRNA
ENSG00000240388 (CTD-2061E19.1)
 ENST00000495909 (CTD-2061E19.1-001) 91354478-91354934 processed_pseudogene
ENSG00000241059 (CTD-2061E19.6)
 ENST00000484429 (CTD-2061E19.6-001) 91355380-91356026 antisense
ENSG00000248323 (LUCAT1)
lung cancer associated transcript 1 (non-protein coding) 		ENST00000511918 (LUCAT1-001) 91303029-91314383 lincRNA
ENST00000513492 (LUCAT1-003) 91303029-91312495 lincRNA
ENST00000513626 (LUCAT1-002) 91311021-91314402 lincRNA
ENSG00000251093 (RP11-414H23.3)
 ENST00000510153 (RP11-414H23.3-001) 91226475-91227071 lincRNA
ENSG00000251356 (RAB5CP2)
RAB5C, member RAS oncogene family pseudogene 2 		ENST00000505368 (RAB5CP2-001) 91476382-91477018 processed_pseudogene
ENSG00000271762 (RP11-213H15.4)
 ENST00000607854 (RP11-213H15.4-001) 91313057-91314402 lincRNA
ENSG00000277001 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000615072 (Metazoa_SRP.1-403) 91314716-91314997 misc_RNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0007Q4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs989 VISTA 10090 13:80488037-81088037
GeneTranscriptPositionBiotype
ENSMUSG00000043889 (Gm8399)
predicted gene 8399 		ENSMUST00000082300 (Gm8399-201) 81064684-81065803 pseudogene
ENSMUSG00000074794 (Arrdc3)
arrestin domain containing 3 		ENSMUST00000099356 (Arrdc3-001) 80883410-80896029 protein_coding
ENSMUST00000159090 (Arrdc3-004) 80883384-80889643 retained_intron
ENSMUST00000159690 (Arrdc3-002) 80883410-80896035 nonsense_mediated_decay
ENSMUST00000159856 (Arrdc3-005) 80890104-80891252 retained_intron
ENSMUST00000161441 (Arrdc3-003) 80886095-80894320 protein_coding
ENSMUST00000162904 (Arrdc3-006) 80890518-80891642 retained_intron
ENSMUSG00000089827 (1700023H06Rik)
RIKEN cDNA 1700023H06 gene 		ENSMUST00000161006 (1700023H06Rik-001) 80884224-80885524 processed_transcript
ENSMUSG00000097098 (9330111N05Rik)
RIKEN cDNA 9330111N05 gene 		ENSMUST00000180409 (9330111N05Rik-201) 80964074-81079857 lincRNA
ENSMUST00000181043 (9330111N05Rik-202) 80962888-81126424 lincRNA
ENSMUST00000181508 (9330111N05Rik-203) 80981144-81128864 lincRNA
ENSMUSG00000097146 (Gm4211)
predicted gene 4211 		ENSMUST00000181103 (Gm4211-201) 80957665-80963730 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007Q4_0001ENSG00000113369ENST00000265138ENST00000503192ENST00000505631ENST00000507075ENST00000508948ENST00000511391ENST00000514284ENSG00000212930ENST00000514239ENSG00000234292ENST00000440769ENSG00000240388ENST00000495909ENSG00000241059ENST00000484429ENSG00000248323ENST00000511918ENST00000513492ENST00000513626ENSG00000251093ENST00000510153ENSG00000251356ENST00000505368ENSG00000271762ENST00000607854ENSG00000277001ENST00000615072CIL_0007Q4_0002ENSMUSG00000043889ENSMUST00000082300ENSMUSG00000074794ENSMUST00000099356ENSMUST00000159090ENSMUST00000159690ENSMUST00000159856ENSMUST00000161441ENSMUST00000162904ENSMUSG00000089827ENSMUST00000161006ENSMUSG00000097098ENSMUST00000180409ENSMUST00000181043ENSMUST00000181508ENSMUSG00000097146ENSMUST00000181103
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007Q4_0001ENSG00000113369ENST00000265138ENSG00000212930ENST00000514239ENSG00000234292ENST00000440769ENSG00000240388ENST00000495909ENSG00000241059ENST00000484429ENSG00000248323ENST00000511918ENST00000513492ENST00000513626ENSG00000251093ENST00000510153ENSG00000251356ENST00000505368ENSG00000271762ENST00000607854ENSG00000277001ENST00000615072CIL_0007Q4_0002ENSMUSG00000043889ENSMUST00000082300ENSMUSG00000074794ENSMUST00000099356ENSMUST00000159690ENSMUST00000161441ENSMUST00000162904ENSMUSG00000089827ENSMUST00000161006ENSMUSG00000097098ENSMUST00000180409ENSMUST00000181043ENSMUST00000181508ENSMUSG00000097146ENSMUST00000181103
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113369 ENST00000265138 20.934±0.00 4.283±0.00 17.481±0.00 6.426±0.34 21.810±3.78 17.427±7.55 3.106±0.78 17.533±0.87 12.459±8.24 29.363±0.85 13.629±6.83 17.260±13.45 8.024±3.70 4.752±2.62
ENST00000503192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508948 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514284 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000212930 ENST00000514239 N/A 0.234±0.00 N/A 0.129±0.00 0.029±0.00 0.027±0.00 N/A 0.030±0.00 0.129±0.00 N/A N/A 0.159±0.00 N/A 0.109±0.00
ENSG00000234292 ENST00000440769 0.104±0.00 0.121±0.00 N/A 0.057±0.00 0.087±0.00 N/A 0.032±0.00 0.288±0.22 0.091±0.00 0.413±0.31 0.152±0.00 0.120±0.05 0.096±0.00 0.206±0.09
ENSG00000240388 ENST00000495909 0.249±0.00 0.529±0.00 N/A 0.103±0.00 0.270±0.00 0.709±0.00 0.030±0.00 0.198±0.00 0.058±0.00 0.286±0.00 0.692±0.00 N/A N/A 0.267±0.00
ENSG00000241059 ENST00000484429 N/A 0.067±0.00 N/A N/A N/A N/A 0.033±0.00 N/A N/A 0.014±0.00 N/A N/A N/A 0.063±0.00
ENSG00000248323 ENST00000511918 N/A 0.235±0.00 N/A N/A 0.379±0.00 N/A 0.788±0.00 N/A N/A 0.460±0.00 N/A 0.136±0.05 0.204±0.00 N/A
ENST00000513492 N/A N/A N/A 0.045±0.00 N/A N/A N/A N/A N/A N/A 0.380±0.00 0.127±0.00 0.097±0.01 N/A
ENST00000513626 N/A 0.031±0.00 N/A 0.035±0.01 0.421±0.00 0.055±0.04 0.094±0.00 0.025±0.00 0.391±0.00 0.459±0.06 N/A 0.053±0.03 0.024±0.00 0.030±0.00
ENSG00000251093 ENST00000510153 N/A N/A N/A N/A N/A N/A 0.191±0.13 N/A N/A N/A N/A N/A N/A N/A
ENSG00000251356 ENST00000505368 0.051±0.00 N/A 0.097±0.00 N/A 0.215±0.00 0.418±0.00 0.190±0.00 0.055±0.00 N/A N/A N/A 0.486±0.00 N/A 0.059±0.00
ENSG00000271762 ENST00000607854 0.468±0.00 0.310±0.00 N/A 0.044±0.00 0.195±0.00 N/A N/A 0.134±0.00 0.083±0.00 N/A 1.077±0.00 0.270±0.00 0.231±0.00 0.176±0.08
ENSG00000277001 ENST00000615072 0.404±0.00 1.545±0.00 N/A 0.721±0.00 0.562±0.00 0.339±0.00 0.516±0.00 1.208±0.00 1.208±0.00 0.089±0.00 0.079±0.00 0.303±0.09 N/A 0.654±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000043889 ENSMUST00000082300 3.929±0.75 1.307±0.32 19.778±11.26 27.749±27.38 2.001±0.48 2.839±0.48 0.468±0.06 1.216±0.35 2.589±3.52 1.853±0.24 0.154±0.13 3.324±2.32 9.579±13.05 1.625±0.51
ENSMUSG00000074794 ENSMUST00000099356 6.953±1.70 11.724±3.26 7.212±0.24 9.249±4.13 4.845±1.35 4.152±0.90 5.227±1.11 8.295±2.00 14.804±9.46 15.965±1.58 7.715±3.86 8.802±5.69 23.336±6.76 7.598±1.66
ENSMUST00000159090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159690 1.254±0.00 N/A 1.147±0.10 3.075±0.30 1.647±0.45 1.434±0.31 1.296±0.00 1.316±0.00 4.782±2.52 2.745±0.00 0.414±0.00 2.311±0.91 3.053±0.00 4.347±0.00
ENSMUST00000159856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161441 4.052±1.63 6.225±1.82 N/A N/A 4.149±2.35 N/A N/A 3.117±0.52 N/A N/A N/A 7.547±2.25 N/A 11.832±1.76
ENSMUST00000162904 8.950±1.17 9.854±1.15 N/A N/A 10.063±4.04 9.998±2.33 8.962±1.39 13.838±1.85 16.937±0.00 23.254±3.48 N/A 17.665±5.28 N/A N/A
ENSMUSG00000089827 ENSMUST00000161006 0.165±0.01 0.364±0.02 0.072±0.03 0.353±0.13 0.137±0.05 0.127±0.00 0.085±0.04 0.169±0.08 0.278±0.18 0.217±0.07 0.040±0.01 0.422±0.14 0.185±0.14 3.889±3.09
ENSMUSG00000097098 ENSMUST00000180409 0.104±0.00 N/A N/A N/A 0.317±0.12 N/A 0.069±0.01 0.079±0.00 0.043±0.03 N/A 0.032±0.00 0.238±0.12 0.106±0.00 N/A
ENSMUST00000181043 0.203±0.07 1.386±0.36 0.058±0.01 0.128±0.04 0.353±0.18 0.142±0.07 0.082±0.04 0.132±0.12 0.037±0.03 0.184±0.07 0.067±0.02 0.362±0.33 0.042±0.01 N/A
ENSMUST00000181508 N/A N/A N/A 0.038±0.00 0.187±0.09 0.097±0.00 0.047±0.02 0.051±0.01 0.008±0.00 0.056±0.02 0.022±0.00 0.112±0.07 0.019±0.00 N/A
ENSMUSG00000097146 ENSMUST00000181103 0.122±0.04 0.263±0.00 0.039±0.00 0.292±0.22 0.116±0.01 0.095±0.03 0.030±0.01 0.071±0.03 0.036±0.03 0.062±0.02 0.078±0.03 0.194±0.02 0.094±0.08 N/A

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