C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thyrotrophic embryonic factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000266304 TEF-001 ENSG00000167074 9606 + 22:41381929-41399326 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000266304
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000266304 7.741±0.00 12.458±0.00 2.333±0.00 15.694±6.50 5.220±2.53 4.756±3.56 4.844±3.69 8.045±2.17 3.024±0.17 2.850±2.25 3.771±0.61 5.509±5.57 2.549±0.79 7.549±3.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065M CIL_00065M_0001 CGP 22:41301522-41399326

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0042803 IEA protein homodimerization activity
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity
GO:0048511 IEA rhythmic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023024 Tef-006 protein_coding Mus_musculus 0 1664
ENSMUST00000109553 Tef-001 protein_coding Mus_musculus 0 1360
ENSMUST00000168632 Tef-010 retained_intron Mus_musculus 0 695
ENSMUST00000168200 Tef-008 protein_coding Mus_musculus 0 525
ENSMUST00000164673 Tef-005 retained_intron Mus_musculus 0 457
ENSMUST00000172208 Tef-009 protein_coding Mus_musculus 0 377
ENSMUST00000167138 Tef-007 processed_transcript Mus_musculus 0 239

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