C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histidine decarboxylase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000267845 HDC-001 ENSG00000140287 9606 - 15:50241947-50266026 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLiverENST00000267845
Transcript ID Brain Breast Liver
ENST00000267845 0.049±0.00 0.259±0.00 0.116±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002E7 CIL_0002E7_0001 CGP 15:50182196-50266026
CIL_0002E6 CIL_0002E6_0001 CGP 15:50241947-50355408

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001694 IEA histamine biosynthetic process
GO:0004398 IDA histidine decarboxylase activity
GO:0005829 TAS cytosol
GO:0006547 TAS histidine metabolic process
GO:0006548 IDA histidine catabolic process
GO:0016831 IEA carboxy-lyase activity
GO:0019752 IEA carboxylic acid metabolic process
GO:0030170 IEA pyridoxal phosphate binding
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0042423 IEA catecholamine biosynthetic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028838 Hdc-001 protein_coding Mus_musculus 0 2049
ENSMUST00000138752 Hdc-002 retained_intron Mus_musculus 0 721
ENSMUST00000124396 Hdc-004 processed_transcript Mus_musculus 0 403
ENSDART00000149321 hdc-002 protein_coding Danio_rerio 0 346
ENSMUST00000148591 Hdc-005 processed_transcript Mus_musculus 0 255
ENSDART00000149810 hdc-001 protein_coding Danio_rerio 1e-36 159

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