C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor corepressor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000268712 NCOR1-001 ENSG00000141027 9606 - 17:16029157-16215549 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000268712
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000268712 4.651±0.00 2.455±0.00 1.984±0.40 2.028±0.00 6.990±0.00 1.732±0.00 4.098±0.00 3.311±1.76 4.825±0.00 3.539±1.59 1.132±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000H6 CIL_0000H6_0001 CGP 17:15976560-16045015
CIL_0000NU CIL_0000NU_0001 CGP 17:15999380-16218185
CIL_0006JO CIL_0006JO_0002 CGP 17:16029157-16351797

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IDA histone deacetylase complex
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0001102 IPI RNA polymerase II activating transcription factor binding
GO:0002361 IEA CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003714 IMP transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IEA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0005876 IDA spindle microtubule
GO:0006351 TAS transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0010467 TAS gene expression
GO:0014067 IEA negative regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 IDA membrane
GO:0016568 IEA chromatin modification
GO:0016580 IDA Sin3 complex
GO:0017053 IDA transcriptional repressor complex
GO:0021794 IEA thalamus development
GO:0031065 IEA positive regulation of histone deacetylation
GO:0032922 IEA circadian regulation of gene expression
GO:0035033 IEA histone deacetylase regulator activity
GO:0035257 IPI nuclear hormone receptor binding
GO:0040014 IEA regulation of multicellular organism growth
GO:0042632 IEA cholesterol homeostasis
GO:0042826 IPI histone deacetylase binding
GO:0042974 IEA retinoic acid receptor binding
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 ISS transcription regulatory region DNA binding
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046329 IDA negative regulation of JNK cascade
GO:0046965 IEA retinoid X receptor binding
GO:0046966 IEA thyroid hormone receptor binding
GO:0051225 IMP spindle assembly
GO:0060318 IEA definitive erythrocyte differentiation
GO:0072362 IMP regulation of glycolytic process by negative regulation of transcription from RNA polymerase II promoter
GO:0072368 IMP regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter
GO:2000191 IC regulation of fatty acid transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101066 Ncor1-202 protein_coding Mus_musculus 0 5910
ENSMUST00000018645 Ncor1-001 protein_coding Mus_musculus 0 5910
ENSMUST00000155712 Ncor1-003 protein_coding Mus_musculus 0 4242
ENSMUST00000037575 Ncor1-201 protein_coding Mus_musculus 0 4229
ENSMUST00000156740 Ncor1-013 protein_coding Mus_musculus 0 4229
ENSMUST00000101067 Ncor1-004 protein_coding Mus_musculus 0 4229
ENSMUST00000127471 Ncor1-009 protein_coding Mus_musculus 0 3155
ENSMUST00000101068 Ncor1-008 retained_intron Mus_musculus 0 2423
ENSMUST00000155486 Ncor1-007 protein_coding Mus_musculus 0 2158
ENSMUST00000159069 Ncor1-002 protein_coding Mus_musculus 0 1897
ENSMUST00000151498 Ncor1-019 protein_coding Mus_musculus 0 1897
ENSMUST00000069456 Ncor1-010 protein_coding Mus_musculus 0 1271
ENSMUST00000161432 Ncor1-022 retained_intron Mus_musculus 0 957
ENSMUST00000161699 Ncor1-015 protein_coding Mus_musculus 0 787
ENSMUST00000161116 Ncor1-020 protein_coding Mus_musculus 0 680
ENSMUST00000161767 Ncor1-023 retained_intron Mus_musculus 0 651
ENSMUST00000131911 Ncor1-006 retained_intron Mus_musculus 0 640
ENSMUST00000141447 Ncor1-012 protein_coding Mus_musculus 0 630
ENSMUST00000161281 Ncor1-024 retained_intron Mus_musculus 0 623
ENSMUST00000161288 Ncor1-017 protein_coding Mus_musculus 0 603
ENSMUST00000117345 Gm6743-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000162236 Ncor1-018 protein_coding Mus_musculus 0 536
ENSMUST00000162077 Ncor1-016 retained_intron Mus_musculus 0 531
ENSMUST00000124027 Ncor1-011 retained_intron Mus_musculus 0 484
ENSMUST00000159224 Ncor1-021 protein_coding Mus_musculus 0 468
ENSMUST00000160171 Ncor1-014 retained_intron Mus_musculus 0 337

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