C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor co-repressor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155486 Ncor1-007 ENSMUSG00000018501 10090 - 11:62384757-62438515 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000155486
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000155486 42.722±0.00 39.708±0.00 29.501±2.58 22.341±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000H6 CIL_0000H6_0002 CGP 11:62267224-62328451
CIL_0000NU CIL_0000NU_0002 CGP 11:62281473-62458541
CIL_0006JO CIL_0006JO_0003 CGP 11:62316426-62514417

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0002361 IMP CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
GO:0003677 IDA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003714 IGI transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IPI transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006357 IGI regulation of transcription from RNA polymerase II promoter
GO:0014067 IMP negative regulation of phosphatidylinositol 3-kinase signaling
GO:0017053 IPI transcriptional repressor complex
GO:0021794 IMP thalamus development
GO:0031065 IDA positive regulation of histone deacetylation
GO:0032922 IGI circadian regulation of gene expression
GO:0035033 IMP histone deacetylase regulator activity
GO:0040014 IGI regulation of multicellular organism growth
GO:0042632 IMP cholesterol homeostasis
GO:0042974 IDA retinoic acid receptor binding
GO:0043565 IDA sequence-specific DNA binding
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0046965 IDA retinoid X receptor binding
GO:0046966 IPI thyroid hormone receptor binding
GO:0060318 IMP definitive erythrocyte differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268712 NCOR1-001 protein_coding Homo_sapiens 0 2158
ENST00000395848 NCOR1-007 protein_coding Homo_sapiens 0 1589
ENST00000395851 NCOR1-003 protein_coding Homo_sapiens 0 2128
ENST00000395857 NCOR1-201 protein_coding Homo_sapiens 0 1589
ENST00000411510 NCOR1-009 protein_coding Homo_sapiens 0 2148
ENST00000430577 NCOR1-012 protein_coding Homo_sapiens 0 499
ENST00000436828 NCOR1-002 protein_coding Homo_sapiens 0 2359
ENST00000460276 NCOR1-008 nonsense_mediated_decay Homo_sapiens 0 2063
ENST00000478176 NCOR1P1-001 processed_transcript Homo_sapiens 8.40779e-45 183
ENST00000486162 NCOR1P1-002 transcribed_unprocessed_pseudogene Homo_sapiens 5e-31 137
ENST00000562547 CH17-53B9.2-002 transcribed_unprocessed_pseudogene Homo_sapiens 2e-34 148
ENST00000579974 NCOR1-021 retained_intron Homo_sapiens 0 195
ENST00000582357 NCOR1-017 protein_coding Homo_sapiens 0 2368
ENST00000585296 NCOR1-020 retained_intron Homo_sapiens 0 809
ENST00000618784 CH17-53B9.2-001 processed_transcript Homo_sapiens 0 211

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