C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 65
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000269383 TRIM65-001 ENSG00000141569 9606 - 17:75888960-75897003 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000269383
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000269383 4.186±0.00 4.093±0.00 0.248±0.00 0.931±0.00 2.725±0.00 1.510±1.39 1.051±0.00 2.556±0.00 1.712±0.00 1.413±0.86 1.380±1.22 4.251±3.09 2.265±0.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0001 VISTA 17:75822026-76422503
CIL_00078V CIL_00078V_0001 CGP 17:75874161-75897003
CIL_0003KG CIL_0003KG_0002 CGP 17:75880335-75905413

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067632 Trim65-001 protein_coding Mus_musculus 0 789
ENSMUST00000106440 Trim65-003 protein_coding Mus_musculus 0 529
ENSMUST00000154061 Trim65-002 processed_transcript Mus_musculus 0 501
ENSMUST00000133039 Trim47-007 processed_transcript Mus_musculus 8e-39 167
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00002 57
ENSMUST00000146544 Golga2-011 processed_transcript Mus_musculus 0.00006 55

Loading