C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuropilin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000272849 NRP2-002 ENSG00000118257 9606 + 2:205683291-205779714 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverMuscleOvaryPlacentaTestisENST00000272849
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENST00000272849 1.972±0.00 0.142±0.00 1.212±0.00 2.483±0.41 4.967±3.27 0.291±0.00 3.598±3.11 0.177±0.00 5.254±2.87 3.808±0.59 1.718±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001R1 CIL_0001R1_0001 CGP 2:204545793-205798133
CIL_00039J CIL_00039J_0001 CGP 2:205681990-206086303

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 NAS:IEA angiogenesis
GO:0001938 TAS positive regulation of endothelial cell proliferation
GO:0002116 NAS semaphorin receptor complex
GO:0004872 TAS receptor activity
GO:0005021 NAS:IEA vascular endothelial growth factor-activated receptor activity
GO:0005576 IEA extracellular region
GO:0005886 TAS plasma membrane
GO:0007155 NAS cell adhesion
GO:0007411 NAS:IEA axon guidance
GO:0008201 IEA heparin binding
GO:0010595 TAS positive regulation of endothelial cell migration
GO:0016020 TAS:IEA membrane
GO:0016021 NAS integral component of membrane
GO:0017154 NAS:IEA semaphorin receptor activity
GO:0019838 TAS growth factor binding
GO:0019955 NAS cytokine binding
GO:0021675 ISS nerve development
GO:0038084 IEA vascular endothelial growth factor signaling pathway
GO:0046872 IEA metal ion binding
GO:0048010 TAS vascular endothelial growth factor receptor signaling pathway
GO:0048846 ISS axon extension involved in axon guidance
GO:0061549 ISS sympathetic ganglion development
GO:0097490 ISS sympathetic neuron projection extension
GO:0097491 ISS sympathetic neuron projection guidance
GO:1902285 ISS semaphorin-plexin signaling pathway involved in neuron projection guidance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027112 Nrp2-005 protein_coding Mus_musculus 0 3711
ENSMUST00000114155 Nrp2-004 protein_coding Mus_musculus 0 3620
ENSMUST00000114157 Nrp2-003 protein_coding Mus_musculus 0 3072
ENSMUST00000075144 Nrp2-006 protein_coding Mus_musculus 0 3072
ENSMUST00000102822 Nrp2-001 protein_coding Mus_musculus 0 3051
ENSMUST00000063594 Nrp2-002 protein_coding Mus_musculus 0 3049
ENSMUST00000126344 Nrp2-007 retained_intron Mus_musculus 0 597

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