C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001R1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000116117-ENSG00000118257 CGP 9606 2:204545793-205798133
GeneTranscriptPositionBiotype
ENSG00000118257 (NRP2)
neuropilin 2 		ENST00000272849 (NRP2-002) 205683291-205779714 protein_coding
ENST00000357118 (NRP2-003) 205683260-205777156 protein_coding
ENST00000357785 (NRP2-005) 205683260-205795172 protein_coding
ENST00000360409 (NRP2-001) 205682500-205798133 protein_coding
ENST00000412873 (NRP2-004) 205683291-205795058 protein_coding
ENST00000417189 (NRP2-006) 205682507-205743698 protein_coding
ENST00000450507 (NRP2-009) 205682501-205716246 protein_coding
ENST00000460987 (NRP2-016) 205749691-205763807 retained_intron
ENST00000464003 (NRP2-007) 205681990-205701557 processed_transcript
ENST00000467850 (NRP2-015) 205764337-205795121 processed_transcript
ENST00000468256 (NRP2-017) 205752468-205763806 retained_intron
ENST00000472299 (NRP2-014) 205763801-205767064 retained_intron
ENST00000477199 (NRP2-011) 205722265-205723922 retained_intron
ENST00000478013 (NRP2-008) 205682658-205697909 retained_intron
ENST00000478054 (NRP2-012) 205739936-205743693 processed_transcript
ENST00000483917 (NRP2-010) 205685793-205697734 retained_intron
ENST00000485684 (NRP2-013) 205763735-205768481 processed_transcript
ENSG00000223890 (AC008171.1)
 ENST00000395058 (AC008171.1-001) 205253304-205253503 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0001R1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000052062-ENSMUSG00000025969 CGP 10090 1:61638824-62818695
GeneTranscriptPositionBiotype
ENSMUSG00000025969 (Nrp2)
neuropilin 2 		ENSMUST00000027112 (Nrp2-005) 62703702-62796981 protein_coding
ENSMUST00000063594 (Nrp2-002) 62703702-62818695 protein_coding
ENSMUST00000075144 (Nrp2-006) 62703285-62818695 protein_coding
ENSMUST00000102822 (Nrp2-001) 62703285-62818695 protein_coding
ENSMUST00000114155 (Nrp2-004) 62703702-62799314 protein_coding
ENSMUST00000114157 (Nrp2-003) 62703702-62818695 protein_coding
ENSMUST00000126344 (Nrp2-007) 62703285-62739932 retained_intron
ENSMUSG00000052062 (Pard3b)
par-3 family cell polarity regulator beta 		ENSMUST00000046673 (Pard3b-002) 61639243-62637923 protein_coding
ENSMUST00000075374 (Pard3b-001) 61638824-62642284 protein_coding
ENSMUST00000094906 (Pard3b-003) 61639243-62642284 protein_coding
ENSMUST00000129030 (Pard3b-005) 61638875-61769859 retained_intron
ENSMUST00000138768 (Pard3b-004) 61638824-62078259 processed_transcript
ENSMUST00000188325 (Pard3b-007) 61638886-62169299 retained_intron
ENSMUSG00000081950 (Gm11600)
predicted gene 11600 		ENSMUST00000119592 (Gm11600-001) 62656695-62657788 processed_pseudogene
ENSMUSG00000084333 (Gm11599)
predicted gene 11599 		ENSMUST00000118720 (Gm11599-001) 62660839-62661716 processed_pseudogene
ENSMUSG00000085019 (Pard3bos2)
par-3 family cell polarity regulator beta, opposite strand 2 		ENSMUST00000127498 (Pard3bos2-001) 62131195-62136109 antisense
ENSMUSG00000085400 (Pard3bos3)
par-3 family cell polarity regulator beta, opposite strand 3 		ENSMUST00000147177 (Pard3bos3-001) 62456725-62499261 antisense
ENSMUSG00000085842 (Pard3bos1)
par-3 family cell polarity regulator beta, opposite strand 1 		ENSMUST00000130699 (Pard3bos1-002) 61786744-61851540 antisense
ENSMUST00000138535 (Pard3bos1-001) 61767415-61851462 antisense
ENSMUSG00000100344 (RP23-15E24.3)
predicted gene 29640 		ENSMUST00000187972 (RP23-15E24.3-001) 61980930-61981207 processed_pseudogene
ENSMUSG00000100750 (RP23-20G7.4)
predicted gene 29084 		ENSMUST00000185587 (RP23-20G7.4-001) 62534491-62535942 antisense
ENSMUSG00000100811 (RP23-20G7.7)
predicted gene 29083 		ENSMUST00000189205 (RP23-20G7.7-001) 62714723-62718073 antisense
ENSMUSG00000101509 (RP23-361M22.2)
predicted gene 29641 		ENSMUST00000188955 (RP23-361M22.2-001) 62095081-62095339 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001R1_0001ENSG00000118257ENST00000272849ENST00000357118ENST00000357785ENST00000360409ENST00000412873ENST00000417189ENST00000450507ENST00000460987ENST00000464003ENST00000467850ENST00000468256ENST00000472299ENST00000477199ENST00000478013ENST00000478054ENST00000483917ENST00000485684ENSG00000223890ENST00000395058CIL_0001R1_0002ENSMUSG00000025969ENSMUST00000027112ENSMUST00000063594ENSMUST00000075144ENSMUST00000102822ENSMUST00000114155ENSMUST00000114157ENSMUST00000126344ENSMUSG00000052062ENSMUST00000046673ENSMUST00000075374ENSMUST00000094906ENSMUST00000129030ENSMUST00000138768ENSMUST00000188325ENSMUSG00000081950ENSMUST00000119592ENSMUSG00000084333ENSMUST00000118720ENSMUSG00000085019ENSMUST00000127498ENSMUSG00000085400ENSMUST00000147177ENSMUSG00000085842ENSMUST00000130699ENSMUST00000138535ENSMUSG00000100344ENSMUST00000187972ENSMUSG00000100750ENSMUST00000185587ENSMUSG00000100811ENSMUST00000189205ENSMUSG00000101509ENSMUST00000188955
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001R1_0001ENSG00000118257ENST00000272849ENST00000357118ENST00000357785ENST00000360409ENST00000412873ENST00000450507ENST00000467850ENST00000478013ENST00000485684ENSG00000223890ENST00000395058CIL_0001R1_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000118257 ENST00000272849 N/A 1.972±0.00 0.142±0.00 1.212±0.00 2.483±0.41 4.967±3.27 0.291±0.00 N/A 3.598±3.11 N/A 0.177±0.00 5.254±2.87 3.808±0.59 1.718±0.00
ENST00000357118 N/A N/A 0.246±0.00 0.459±0.00 2.462±0.00 2.001±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000357785 N/A N/A N/A N/A N/A N/A N/A 0.806±0.00 1.091±0.00 3.230±0.00 0.219±0.00 N/A N/A N/A
ENST00000360409 3.744±0.00 1.075±0.00 N/A 1.054±0.00 1.776±0.00 1.754±0.00 0.446±0.00 N/A 1.575±1.27 1.056±0.00 N/A 5.853±4.50 8.857±5.68 1.274±0.00
ENST00000412873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.449±0.00 N/A N/A N/A
ENST00000417189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450507 N/A N/A 1.076±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460987 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.295±0.00 N/A N/A N/A
ENST00000468256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478013 N/A N/A 0.535±0.00 N/A N/A N/A N/A N/A 18.493±0.00 N/A N/A 13.111±0.00 N/A N/A
ENST00000478054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485684 N/A N/A 0.374±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223890 ENST00000395058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.903±0.00 0.356±0.00 0.754±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025969 ENSMUST00000027112 3.987±0.06 N/A N/A N/A 2.010±0.20 6.448±0.97 1.573±0.00 1.514±0.30 0.410±0.00 3.174±0.49 N/A N/A 0.771±0.00 0.392±0.13
ENSMUST00000063594 3.034±0.78 N/A 18.662±0.06 9.064±4.76 4.212±2.00 N/A 2.448±0.87 2.221±0.37 1.125±0.61 3.192±1.05 0.825±0.30 7.211±3.78 2.240±0.83 0.348±0.17
ENSMUST00000075144 2.234±0.00 6.660±2.00 N/A N/A 6.972±0.57 8.218±3.48 1.283±0.00 3.013±1.95 0.925±0.57 2.978±0.21 0.367±0.00 7.514±2.82 0.887±0.00 N/A
ENSMUST00000102822 5.276±2.09 8.199±2.13 14.593±0.34 7.955±4.94 4.192±0.79 7.197±2.08 2.987±0.33 2.727±0.38 0.634±0.41 4.603±1.69 0.389±0.16 6.418±1.56 1.764±0.80 0.132±0.06
ENSMUST00000114155 2.508±0.53 3.137±0.59 32.307±4.16 3.496±1.42 2.860±1.00 8.758±0.95 1.543±0.14 1.858±0.30 0.208±0.10 4.073±0.42 0.453±0.04 5.182±1.00 0.992±0.58 0.289±0.06
ENSMUST00000114157 N/A N/A N/A N/A 1.589±0.00 N/A N/A N/A 0.596±0.30 N/A 0.194±0.00 N/A 1.053±0.00 0.141±0.00
ENSMUST00000126344 N/A 4.019±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000052062 ENSMUST00000046673 0.526±0.00 1.625±0.51 N/A N/A 0.701±0.00 1.550±0.15 0.519±0.00 0.933±0.19 0.185±0.00 1.384±0.22 N/A 1.114±0.15 N/A 0.858±0.45
ENSMUST00000075374 2.098±1.19 0.867±0.17 5.985±0.99 0.792±0.43 0.967±0.28 2.786±0.19 0.764±0.48 1.245±0.50 0.395±0.11 2.664±0.42 0.545±0.19 2.119±0.44 0.498±0.17 0.665±0.14
ENSMUST00000094906 N/A N/A 0.911±0.00 N/A N/A N/A N/A N/A 0.078±0.00 N/A 0.339±0.07 0.897±0.00 0.501±0.00 N/A
ENSMUST00000129030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.862±0.00 N/A N/A
ENSMUST00000138768 N/A 2.905±1.26 N/A N/A 2.325±0.34 3.707±1.23 N/A N/A 0.237±0.05 4.494±0.56 N/A 2.352±0.75 N/A N/A
ENSMUST00000188325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081950 ENSMUST00000119592 N/A N/A 0.149±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.887±0.00 N/A
ENSMUSG00000084333 ENSMUST00000118720 0.199±0.08 0.182±0.03 2.267±0.22 1.444±0.12 0.230±0.06 0.322±0.13 0.220±0.08 0.402±0.11 0.872±1.62 0.128±0.09 0.082±0.01 0.209±0.17 0.123±0.04 0.080±0.03
ENSMUSG00000085019 ENSMUST00000127498 N/A N/A 0.113±0.00 0.080±0.02 N/A 0.119±0.00 0.167±0.00 0.102±0.00 0.020±0.02 N/A N/A 0.049±0.00 N/A 0.137±0.06
ENSMUSG00000085400 ENSMUST00000147177 0.114±0.02 0.223±0.08 0.171±0.01 0.025±0.01 0.128±0.06 0.133±0.01 N/A 0.132±0.07 0.560±0.25 0.249±0.00 0.059±0.00 0.206±0.12 0.051±0.02 0.039±0.00
ENSMUSG00000085842 ENSMUST00000130699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.735±0.00
ENSMUST00000138535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000100344 ENSMUST00000187972 N/A N/A N/A N/A 0.568±0.25 N/A N/A N/A 0.064±0.00 N/A N/A 0.358±0.00 0.170±0.03 0.278±0.00
ENSMUSG00000100750 ENSMUST00000185587 16.240±2.54 10.686±0.77 37.346±5.11 23.912±16.22 19.139±5.12 27.697±8.20 10.519±1.41 12.827±1.26 13.206±12.10 21.051±2.61 4.421±0.46 11.172±3.58 40.719±27.63 7.794±3.83
ENSMUSG00000100811 ENSMUST00000189205 0.111±0.05 N/A 0.113±0.00 0.165±0.12 0.254±0.00 0.129±0.00 0.053±0.00 0.153±0.00 0.020±0.01 0.091±0.01 0.162±0.00 0.322±0.21 0.048±0.02 N/A
ENSMUSG00000101509 ENSMUST00000188955 0.719±0.08 N/A N/A 0.107±0.00 N/A 1.332±0.00 N/A 0.428±0.00 0.609±0.00 N/A N/A N/A 0.101±0.00 0.419±0.10

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