C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuropilin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000063594 Nrp2-002 ENSMUSG00000025969 10090 + 1:62703702-62818695 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000063594
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000063594 3.034±0.78 18.662±0.06 9.064±4.76 4.212±2.00 2.448±0.87 2.221±0.37 1.125±0.61 3.192±1.05 0.825±0.30 7.211±3.78 2.240±0.83 0.348±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001R1 CIL_0001R1_0002 CGP 1:61638824-62818695
CIL_00039J CIL_00039J_0002 CGP 1:62703285-63114667

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0001755 IMP neural crest cell migration
GO:0001764 IMP neuron migration
GO:0005021 IEA vascular endothelial growth factor-activated receptor activity
GO:0005515 IPI protein binding
GO:0005886 IC plasma membrane
GO:0007155 IEA cell adhesion
GO:0007411 IMP axon guidance
GO:0007507 IGI heart development
GO:0008201 IEA heparin binding
GO:0016021 IEA integral component of membrane
GO:0017154 IDA semaphorin receptor activity
GO:0021612 IMP facial nerve structural organization
GO:0021649 IMP vestibulocochlear nerve structural organization
GO:0021675 IMP nerve development
GO:0021828 IMP gonadotrophin-releasing hormone neuronal migration to the hypothalamus
GO:0030424 IDA axon
GO:0036486 IMP ventral trunk neural crest cell migration
GO:0038084 IEA vascular endothelial growth factor signaling pathway
GO:0046872 IEA metal ion binding
GO:0048846 IMP axon extension involved in axon guidance
GO:0050919 IMP negative chemotaxis
GO:0061549 IMP sympathetic ganglion development
GO:0061551 IMP trigeminal ganglion development
GO:0061552 IMP ganglion morphogenesis
GO:0097374 IMP sensory neuron axon guidance
GO:0097490 IMP sympathetic neuron projection extension
GO:0097491 IMP sympathetic neuron projection guidance
GO:1901166 IMP neural crest cell migration involved in autonomic nervous system development
GO:1902285 IMP semaphorin-plexin signaling pathway involved in neuron projection guidance
GO:1903375 IMP facioacoustic ganglion development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272849 NRP2-002 protein_coding Homo_sapiens 0 3049
ENST00000357118 NRP2-003 protein_coding Homo_sapiens 0 3057
ENST00000357785 NRP2-005 protein_coding Homo_sapiens 0 3513
ENST00000360409 NRP2-001 protein_coding Homo_sapiens 0 4294
ENST00000412873 NRP2-004 protein_coding Homo_sapiens 0 3049
ENST00000417189 NRP2-006 protein_coding Homo_sapiens 0 2202
ENST00000450507 NRP2-009 protein_coding Homo_sapiens 0 510
ENST00000460987 NRP2-016 retained_intron Homo_sapiens 0 418
ENST00000464003 NRP2-007 processed_transcript Homo_sapiens 0 438
ENST00000467850 NRP2-015 processed_transcript Homo_sapiens 0 627
ENST00000472299 NRP2-014 retained_intron Homo_sapiens 0 353
ENST00000477199 NRP2-011 retained_intron Homo_sapiens 0 464
ENST00000478013 NRP2-008 retained_intron Homo_sapiens 0 723
ENST00000478054 NRP2-012 processed_transcript Homo_sapiens 0 580
ENST00000483917 NRP2-010 retained_intron Homo_sapiens 0 261
ENST00000485684 NRP2-013 processed_transcript Homo_sapiens 0 444

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