C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000273062 CTDSP1-001 ENSG00000144579 9606 + 2:218399755-218405941 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000273062
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000273062 16.799±0.00 8.606±0.00 1.443±0.00 12.547±0.00 4.616±0.00 4.173±3.95 7.908±3.18 6.587±5.45 3.975±2.52 5.245±3.05 38.351±42.09 32.589±9.60 7.837±1.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005VF CIL_0005VF_0001 CGP 2:218382029-218405941
CIL_000650 CIL_000650_0001 CGP 2:218398256-218453295

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001933 IEA negative regulation of protein phosphorylation
GO:0005515 IPI:IEA protein binding
GO:0005634 TAS nucleus
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006470 IDA protein dephosphorylation
GO:0008420 IDA CTD phosphatase activity
GO:0016791 IEA phosphatase activity
GO:0045665 IEA negative regulation of neuron differentiation
GO:0046872 IEA metal ion binding
GO:0050768 IEA negative regulation of neurogenesis
GO:0070062 IDA extracellular vesicular exosome
GO:2000134 IEA negative regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027367 Ctdsp1-001 protein_coding Mus_musculus 0 1652
ENSMUST00000141175 Ctdsp1-002 retained_intron Mus_musculus 0 826
ENSMUST00000152659 Ctdsp1-003 protein_coding Mus_musculus 0 459

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