C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000274008 SPATA5-001 ENSG00000145375 9606 + 4:122923074-123319450 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000274008
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000274008 1.419±0.00 0.560±0.00 0.745±0.00 0.428±0.03 1.221±0.00 1.049±0.03 0.606±0.00 0.627±0.38 0.713±0.49 0.773±0.26 0.379±0.28 0.749±0.13 0.622±0.39 2.278±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006YK CIL_0006YK_0002 CGP 4:122888697-123319450
CIL_0007AG CIL_0007AG_0001 CGP 4:122923074-123403760

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005739 IEA mitochondrion
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0009378 IEA four-way junction helicase activity
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108112 Spata5-001 protein_coding Mus_musculus 0 2826
ENSMUST00000029277 Spata5-002 protein_coding Mus_musculus 0 2811
ENSMUST00000130674 Spata5-007 processed_transcript Mus_musculus 0 680
ENSMUST00000124347 Spata5-005 processed_transcript Mus_musculus 0 654
ENSMUST00000142199 Spata5-006 retained_intron Mus_musculus 0 355
ENSMUST00000179332 5730455P16Rik-201 protein_coding Mus_musculus 0.00001 58
ENSMUST00000103225 5730455P16Rik-001 protein_coding Mus_musculus 0.00001 58

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