C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pleckstrin and Sec7 domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000274710 PSD2-001 ENSG00000146005 9606 + 5:139795821-139844466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000274710
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000274710 0.016±0.00 0.042±0.00 18.222±12.83 0.148±0.01 0.061±0.00 0.011±0.00 0.033±0.01 0.037±0.00 0.053±0.00 0.090±0.04 0.072±0.04 0.720±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053Z CIL_00053Z_0001 CGP 5:139647299-139844466
CIL_000540 CIL_000540_0001 CGP 5:139795821-140043299

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005086 IBA:IEA ARF guanyl-nucleotide exchange factor activity
GO:0005543 IEA phospholipid binding
GO:0016021 IEA integral component of membrane
GO:0030054 IBA cell junction
GO:0030182 IBA neuron differentiation
GO:0030425 IEA dendrite
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043025 IEA neuronal cell body
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115716 Psd2-001 protein_coding Mus_musculus 0 2575
ENSMUST00000176873 Psd2-004 protein_coding Mus_musculus 0 2560
ENSMUST00000175734 Psd2-005 protein_coding Mus_musculus 0 2543
ENSMUST00000177432 Psd2-003 protein_coding Mus_musculus 0 2518
ENSMUST00000176472 Psd2-002 nonsense_mediated_decay Mus_musculus 0 1633
ENSMUST00000175720 Psd2-006 retained_intron Mus_musculus 0 693

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