C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Berardinelli-Seip congenital lipodystrophy 2 homolog (seipin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162580 Bscl2-005 ENSMUSG00000071657 10090 + 19:8840535-8848666 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0002 VISTA 19:8644197-9245760

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000278893 BSCL2-008 protein_coding Homo_sapiens 0 562
ENST00000301781 BSCL2-002 nonsense_mediated_decay Homo_sapiens 0 562
ENST00000304501 SOX7-001 protein_coding Homo_sapiens 0.00000000004 75
ENST00000316286 ZNF786-002 protein_coding Homo_sapiens 0.000000002 69
ENST00000320672 SSBP2-001 protein_coding Homo_sapiens 0.0002 55
ENST00000329905 CALHM1-001 protein_coding Homo_sapiens 0.00006 55
ENST00000349533 LEPR-001 protein_coding Homo_sapiens 0.0000000001 75
ENST00000360796 BSCL2-003 protein_coding Homo_sapiens 0 909
ENST00000377495 TMEM236-001 protein_coding Homo_sapiens 0.0000006 62
ENST00000393640 ST3GAL2-001 protein_coding Homo_sapiens 0.000003 60
ENST00000403550 BSCL2-006 protein_coding Homo_sapiens 0 909
ENST00000403734 HNRNPUL2-BSCL2-001 nonsense_mediated_decay Homo_sapiens 0 909
ENST00000405837 BSCL2-001 protein_coding Homo_sapiens 0 893
ENST00000407022 BSCL2-005 protein_coding Homo_sapiens 0 909
ENST00000412351 BSCL2-015 processed_transcript Homo_sapiens 0 484
ENST00000421906 BSCL2-004 protein_coding Homo_sapiens 0 909
ENST00000448568 BSCL2-022 protein_coding Homo_sapiens 0 558
ENST00000449636 BSCL2-012 protein_coding Homo_sapiens 2e-33 147
ENST00000463679 BSCL2-011 retained_intron Homo_sapiens 0 200
ENST00000468505 BSCL2-013 retained_intron Homo_sapiens 0 475
ENST00000470529 BSCL2-014 retained_intron Homo_sapiens 0 200
ENST00000504669 ITGA1-003 retained_intron Homo_sapiens 0.0000000003 73
ENST00000513816 RAPGEF2-002 retained_intron Homo_sapiens 0.0000000007 71
ENST00000524862 BSCL2-020 protein_coding Homo_sapiens 0 387
ENST00000526426 BSCL2-028 processed_transcript Homo_sapiens 0 361
ENST00000531524 BSCL2-023 protein_coding Homo_sapiens 0 283
ENST00000532115 BSCL2-017 processed_transcript Homo_sapiens 1.00053e-42 176
ENST00000532818 BSCL2-019 protein_coding Homo_sapiens 0 335
ENST00000533982 BSCL2-024 protein_coding Homo_sapiens 0 350
ENST00000537604 BSCL2-029 processed_transcript Homo_sapiens 0 292
ENST00000590120 LYL1-002 retained_intron Homo_sapiens 0.000000000002 79
ENST00000602136 MYO1F-012 nonsense_mediated_decay Homo_sapiens 0.00001 55

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