C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: desmocollin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000280904 DSC2-001 ENSG00000134755 9606 - 18:31058840-31102415 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungOvaryTestisENST00000280904
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Ovary Testis
ENST00000280904 0.395±0.00 0.149±0.00 0.058±0.00 0.457±0.14 1.369±1.14 0.230±0.12 0.097±0.00 0.249±0.00 0.596±0.46 0.064±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EN CIL_0006EN_0001 CGP 18:30990008-31102415
CIL_0006EM CIL_0006EM_0001 CGP 18:31058840-31162856

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0005913 IEA cell-cell adherens junction
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0009267 IEA cellular response to starvation
GO:0014704 IDA intercalated disc
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030057 IDA desmosome
GO:0031410 IDA cytoplasmic vesicle
GO:0070062 IDA extracellular vesicular exosome
GO:0086005 IMP ventricular cardiac muscle cell action potential
GO:0086042 IMP cardiac muscle cell-cardiac muscle cell adhesion
GO:0086069 IMP bundle of His cell to Purkinje myocyte communication
GO:0086091 IMP regulation of heart rate by cardiac conduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075214 Dsc2-002 protein_coding Mus_musculus 0 1851
ENSMUST00000039247 Dsc2-001 protein_coding Mus_musculus 0 1709
ENSMUST00000128464 Dsc2-003 nonsense_mediated_decay Mus_musculus 0 1609
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000001 62

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