C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: centromere protein U
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000281453 CENPU-001 ENSG00000151725 9606 - 4:184694618-184734133 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000281453
Transcript ID Adipose Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000281453 0.583±0.00 0.381±0.00 0.922±0.00 1.555±0.45 0.771±0.00 0.411±0.00 0.615±0.00 2.658±1.29 2.404±0.27 10.007±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097G CIL_00097G_0001 VISTA 4:184147184-184748475

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000776 IEA kinetochore
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005815 IDA microtubule organizing center
GO:0005829 TAS cytosol
GO:0006334 TAS nucleosome assembly
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016032 IEA viral process
GO:0034080 TAS CENP-A containing nucleosome assembly
GO:0043009 IEA chordate embryonic development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034045 Cenpu-001 protein_coding Mus_musculus 0 451
ENSMUST00000135432 Cenpu-003 nonsense_mediated_decay Mus_musculus 0 448
ENSMUST00000093518 Cenpu-002 protein_coding Mus_musculus 0 446
ENSMUST00000136724 Cenpu-007 retained_intron Mus_musculus 0 351
ENSMUST00000136335 Primpol-003 retained_intron Mus_musculus 3e-35 154
ENSMUST00000040468 Primpol-001 protein_coding Mus_musculus 3e-35 154

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