C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: upstream binding protein 1 (LBP-1a)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000283629 UBP1-001 ENSG00000153560 9606 - 3:33388336-33440378 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000283629
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000283629 1.813±0.00 2.865±0.00 4.249±3.41 4.335±0.00 3.316±2.52 4.592±0.00 2.679±0.34 3.954±1.78 1.571±0.56 1.602±0.69 1.945±0.65 3.330±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001TS CIL_0001TS_0002 CGP 3:33150042-33403662

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0005634 TAS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0019079 TAS viral genome replication
GO:0045892 TAS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000084885 Ubp1-202 protein_coding Mus_musculus 0 2604
ENSMUST00000009885 Ubp1-201 protein_coding Mus_musculus 0 1219
ENSMUST00000116492 Ubp1-203 protein_coding Mus_musculus 0 1177
ENSMUST00000035090 Fbxl2-001 protein_coding Mus_musculus 0 259

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