C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: upstream binding protein 1 (LBP-1a)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153560 UBP1 9606 - 3:33388336-33441371 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000283628 UBP1-003 33390134-33440510 protein_coding
  ENST00000283629 UBP1-001 33388336-33440378 protein_coding
  ENST00000411650 UBP1-008 33396243-33411659 nonsense_mediated_decay
  ENST00000447368 UBP1-002 33388339-33440010 protein_coding
  ENST00000456378 UBP1-007 33412726-33440587 protein_coding
  ENST00000464787 UBP1-011 33392363-33396302 retained_intron
  ENST00000466441 UBP1-005 33390097-33396621 retained_intron
  ENST00000467613 UBP1-015 33400962-33412756 processed_transcript
  ENST00000481761 UBP1-009 33409285-33416820 processed_transcript
  ENST00000486388 UBP1-010 33390266-33408722 processed_transcript
  ENST00000490112 UBP1-014 33396582-33400267 retained_intron
  ENST00000492136 UBP1-004 33388338-33398438 retained_intron
  ENST00000496310 UBP1-006 33416793-33441371 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000283628ENST00000283629ENST00000447368ENST00000467613ENST00000481761ENST00000492136ENST00000496310
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000283628 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.588±0.00 N/A N/A
ENST00000283629 1.813±0.00 2.865±0.00 N/A 4.249±3.41 4.335±0.00 N/A 3.316±2.52 4.592±0.00 2.679±0.34 3.954±1.78 1.571±0.56 1.602±0.69 1.945±0.65 3.330±0.00
ENST00000447368 8.447±0.00 10.586±0.00 3.322±0.00 2.476±0.18 7.403±2.26 11.813±5.69 3.124±1.97 5.591±2.58 4.750±0.55 4.233±0.00 0.978±0.23 8.321±3.97 6.305±1.19 9.326±1.45
ENST00000467613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.030±0.00 14.696±0.00 23.952±0.00
ENST00000481761 N/A N/A N/A N/A N/A N/A 2.845±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000492136 N/A 1.119±0.00 0.746±0.00 0.655±0.13 2.169±0.00 1.619±0.00 0.368±0.00 N/A 0.791±0.00 N/A N/A 0.992±0.27 N/A 2.201±0.00
ENST00000496310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.114±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001TS CIL_0001TS_0002 CGP 3:33150042-33403662

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0005634 TAS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0019079 TAS viral genome replication
GO:0045892 TAS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018000 ubp1 upstream binding protein 1 (LBP-1a) protein_coding Danio_rerio
ENSMUSG00000009741 Ubp1 upstream binding protein 1 protein_coding Mus_musculus

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