C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AF4/FMR2 family, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000286437 AFF2-201 ENSG00000155966 9606 + X:148719091-149000663 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000286437
Transcript ID Adrenal Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000286437 0.037±0.00 0.346±0.00 0.176±0.00 0.024±0.00 0.011±0.00 0.009±0.00 0.100±0.00 0.174±0.21 1.022±0.19 0.677±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PX CIL_0007PX_0001 VISTA X:148447492-149048635
CIL_0000PK CIL_0000PK_0002 CGP X:148500619-149521096

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002151 ISS G-quadruplex RNA binding
GO:0006397 IEA mRNA processing
GO:0007420 TAS brain development
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0043484 IMP regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033532 Aff2-001 protein_coding Mus_musculus 0 3295
ENSMUST00000151662 Aff2-003 retained_intron Mus_musculus 0 532
ENSMUST00000143097 Aff2-002 processed_transcript Mus_musculus 0 303

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