C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphodiesterase 6D, cGMP-specific, rod, delta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000287600 PDE6D-001 ENSG00000156973 9606 - 2:231732425-231781309 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000287600
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000287600 8.042±0.00 9.827±0.00 1.205±0.00 10.320±5.31 3.683±2.37 4.596±3.16 3.498±2.49 5.368±4.66 2.551±0.24 5.063±2.74 2.815±1.75 8.806±5.56 13.218±5.79 17.581±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0001 VISTA 2:231361987-231963495
CIL_0007WD CIL_0007WD_0001 VISTA 2:231362545-231967398
CIL_0007FM CIL_0007FM_0001 CGP 2:231706895-231786272
CIL_0007FL CIL_0007FL_0001 CGP 2:231732425-231809254

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004114 IEA 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0005095 ISS GTPase inhibitor activity
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0007601 IEA visual perception
GO:0008152 IEA metabolic process
GO:0016020 IEA membrane
GO:0017137 IPI Rab GTPase binding
GO:0031410 IDA cytoplasmic vesicle
GO:0033124 ISS regulation of GTP catabolic process
GO:0043086 IEA negative regulation of catalytic activity
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027444 Pde6d-001 protein_coding Mus_musculus 0 1057
ENSMUST00000146220 Pde6d-004 protein_coding Mus_musculus 0 752
ENSMUST00000143674 Pde6d-002 nonsense_mediated_decay Mus_musculus 0 638
ENSMUST00000148683 Pde6d-003 retained_intron Mus_musculus 0 601
ENSMUST00000150653 Pde6d-005 processed_transcript Mus_musculus 0 414

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