C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: Fanconi anemia, complementation group C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099444 Fancc-006 ENSMUSG00000021461 10090 - 13:63312135-63431694 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeLiverPlacentaTestisENSMUST00000099444
Transcript ID Adipose Liver Placenta Testis
ENSMUST00000099444 5.690±0.00 3.503±0.71 2.122±0.70 4.166±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002J6 CIL_0002J6_0002 CGP 13:62864753-63326096
CIL_0002J5 CIL_0002J5_0002 CGP 13:63014934-63497278
CIL_00086R CIL_00086R_0002 VISTA 13:63254160-63855734
CIL_0008KR CIL_0008KR_0002 VISTA 13:63268917-63869745
CIL_0002J8 CIL_0002J8_0002 CGP 13:63304709-63565520

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002262 IGI myeloid cell homeostasis
GO:0006289 IMP nucleotide-excision repair
GO:0007276 IMP gamete generation
GO:0007281 IMP germ cell development
GO:0019430 IGI removal of superoxide radicals

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000289081 FANCC-001 protein_coding Homo_sapiens 0 935
ENST00000375305 FANCC-002 protein_coding Homo_sapiens 0 935
ENST00000433829 FANCC-004 protein_coding Homo_sapiens 0 287
ENST00000474949 FANCC-005 processed_transcript Homo_sapiens 0 211
ENST00000490972 FANCC-201 protein_coding Homo_sapiens 0 896

Loading