C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MIS18 kinetochore protein A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000290130 MIS18A-001 ENSG00000159055 9606 - 21:32268219-32279069 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000290130
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000290130 1.991±0.00 3.413±0.00 0.184±0.00 0.816±0.21 1.328±0.90 1.350±0.57 0.484±0.40 1.112±0.77 0.750±0.12 0.296±0.13 0.094±0.07 7.680±4.54 4.155±0.95 10.885±0.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001F2 CIL_0001F2_0001 CGP 21:31873315-32279069
CIL_0001I6 CIL_0001I6_0001 CGP 21:32268219-32314784

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000775 IEA chromosome, centromeric region
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006334 TAS nucleosome assembly
GO:0007059 IEA chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0008150 ND biological_process
GO:0034080 TAS CENP-A containing nucleosome assembly
GO:0044030 IEA regulation of DNA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099554 Mis18a-001 protein_coding Mus_musculus 0 424
ENSMUST00000147546 Mis18a-003 retained_intron Mus_musculus 0 274
ENSMUST00000129171 Mis18a-002 retained_intron Mus_musculus 8e-31 139

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