C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: drebrin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000292385 DBN1-002 ENSG00000113758 9606 - 5:177456927-177473198 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000292385
Transcript ID Testis
ENST00000292385 3.707±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0001 VISTA 5:177089375-177692188
CIL_0000XB CIL_0000XB_0002 CGP 5:177446445-177474401
CIL_0002YE CIL_0002YE_0001 CGP 5:177456608-177497606

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA:NAS actin binding
GO:0005515 IPI protein binding
GO:0005522 ISS profilin binding
GO:0005622 IEA intracellular
GO:0005737 NAS cytoplasm
GO:0005886 IEA plasma membrane
GO:0005911 IEA cell-cell junction
GO:0005921 IEA gap junction
GO:0007015 ISS actin filament organization
GO:0007399 IEA nervous system development
GO:0010643 IEA cell communication by chemical coupling
GO:0010644 IEA cell communication by electrical coupling
GO:0015629 ISS actin cytoskeleton
GO:0016020 IEA membrane
GO:0030425 NAS dendrite
GO:0032507 IEA maintenance of protein location in cell
GO:0042641 NAS actomyosin
GO:0048168 NAS regulation of neuronal synaptic plasticity
GO:0048699 IEA generation of neurons
GO:0050773 NAS regulation of dendrite development
GO:0061351 IEA neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109923 Dbn1-002 protein_coding Mus_musculus 0 2416
ENSMUST00000109921 Dbn1-009 protein_coding Mus_musculus 0 2134
ENSMUST00000021950 Dbn1-001 protein_coding Mus_musculus 0 1387
ENSMUST00000135705 Dbn1-003 retained_intron Mus_musculus 0 1033
ENSMUST00000139275 Dbn1-005 protein_coding Mus_musculus 0 749
ENSMUST00000124480 Dbn1-006 processed_transcript Mus_musculus 0 676
ENSMUST00000139516 Dbn1-008 retained_intron Mus_musculus 0 364
ENSMUST00000127867 Dbn1-007 retained_intron Mus_musculus 0 331
ENSMUST00000175813 Dbn1-010 retained_intron Mus_musculus 0 237

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