C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chemokine (C-X-C motif) ligand 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000293778 CXCL16-001 ENSG00000161921 9606 - 17:4733526-4739819 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000293778
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000293778 30.555±0.00 14.866±0.00 1.497±0.00 4.622±3.87 19.492±0.00 6.146±0.00 1.414±1.27 8.078±5.10 8.486±7.15 35.078±33.45 1.293±0.00 10.482±4.23 13.224±2.66 17.130±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000106 CIL_000106_0001 CGP 17:4710489-4733610
CIL_0001RD CIL_0001RD_0001 CGP 17:4731428-4739922
CIL_0001RE CIL_0001RE_0001 CGP 17:4733526-4746119

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005041 ISS low-density lipoprotein receptor activity
GO:0005044 TAS scavenger receptor activity
GO:0005576 TAS extracellular region
GO:0005615 IDA extracellular space
GO:0005886 IEA plasma membrane
GO:0006898 IEA:NAS receptor-mediated endocytosis
GO:0006935 NAS chemotaxis
GO:0008009 ISS chemokine activity
GO:0010818 IEA T cell chemotaxis
GO:0016020 TAS membrane
GO:0016021 NAS integral component of membrane
GO:0030307 IEA:IMP positive regulation of cell growth
GO:0030335 IEA:IMP positive regulation of cell migration
GO:0034097 IDA response to cytokine
GO:0034341 IEA:IDA response to interferon-gamma
GO:0034612 IEA:IDA response to tumor necrosis factor
GO:0048247 IEA lymphocyte chemotaxis
GO:0071222 IEA cellular response to lipopolysaccharide

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153820 Pml-003 protein_coding Mus_musculus 0.00000007 64
ENSMUST00000172599 Clic1-002 retained_intron Mus_musculus 0.0000002 62
ENSMUST00000127431 Cpne7-004 retained_intron Mus_musculus 0.0000002 62
ENSMUST00000141278 Lypla1-004 retained_intron Mus_musculus 0.0000009 60
ENSMUST00000181377 Slc35a5-004 retained_intron Mus_musculus 0.0000009 60
ENSMUST00000029388 4930579G24Rik-001 protein_coding Mus_musculus 0.000003 58
ENSMUST00000035519 Otud7b-201 protein_coding Mus_musculus 0.000003 58
ENSMUST00000098849 Otud7b-002 protein_coding Mus_musculus 0.000003 58
ENSMUST00000090785 Otud7b-001 protein_coding Mus_musculus 0.000003 58
ENSMUST00000119599 Zfp597-003 processed_transcript Mus_musculus 0.0001 53
ENSMUST00000090522 Zfp597-001 protein_coding Mus_musculus 0.0001 53

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