C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat transmembrane neuronal 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295057 LRRTM1-002 ENSG00000162951 9606 - 2:80301878-80304749 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartOvaryTestisENST00000295057
Transcript ID Brain Breast Heart Ovary Testis
ENST00000295057 1.193±0.12 0.077±0.00 0.022±0.00 0.158±0.09 0.287±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NY CIL_0003NY_0001 CGP 2:79185231-80648861
CIL_0004I9 CIL_0004I9_0002 CGP 2:80288351-84460045

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002091 IEA negative regulation of receptor internalization
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0007626 IEA locomotory behavior
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0030424 IDA axon
GO:0030426 IDA growth cone
GO:0035418 IEA protein localization to synapse
GO:0035640 IEA exploration behavior
GO:0045211 IEA postsynaptic membrane
GO:0050808 IEA synapse organization
GO:0060076 IEA excitatory synapse
GO:0060291 IEA long-term synaptic potentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159616 Lrrtm1-001 protein_coding Mus_musculus 0 3145
ENSMUST00000161677 Lrrtm1-002 protein_coding Mus_musculus 0 3127
ENSMUST00000020400 Lrrtm1-003 nonsense_mediated_decay Mus_musculus 0 3062
ENSMUST00000161811 Lrrtm1-004 protein_coding Mus_musculus 0 939

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