C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RELT-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000297164 RELL2-001 ENSG00000164620 9606 + 5:141637026-141641077 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000297164
Transcript ID Brain
ENST00000297164 2.696±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QE CIL_0006QE_0001 CGP 5:141620876-141641077
CIL_0006QB CIL_0006QB_0001 CGP 5:141636950-141651419

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005518 IEA collagen binding
GO:0005604 IEA basement membrane
GO:0005886 IEA plasma membrane
GO:0010811 IEA positive regulation of cell-substrate adhesion
GO:0016021 IEA integral component of membrane
GO:0031012 IEA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176104 Rell2-010 protein_coding Mus_musculus 0 1483
ENSMUST00000070709 Rell2-001 protein_coding Mus_musculus 0 1369
ENSMUST00000177058 Rell2-007 protein_coding Mus_musculus 0 1365
ENSMUST00000091932 Rell2-002 protein_coding Mus_musculus 0 1107
ENSMUST00000168056 Rell2-003 nonsense_mediated_decay Mus_musculus 0 835
ENSMUST00000163128 Rell2-004 nonsense_mediated_decay Mus_musculus 0 835
ENSMUST00000163591 Rell2-005 protein_coding Mus_musculus 0 749
ENSMUST00000169360 Rell2-011 protein_coding Mus_musculus 0 747
ENSMUST00000176902 Rell2-006 protein_coding Mus_musculus 0 713
ENSMUST00000169498 Rell2-012 protein_coding Mus_musculus 0 662
ENSMUST00000166531 Rell2-009 retained_intron Mus_musculus 0 411
ENSMUST00000043437 Fchsd1-001 protein_coding Mus_musculus 0 363
ENSMUST00000165643 Fchsd1-002 retained_intron Mus_musculus 0 363
ENSMUST00000164499 Rell2-008 retained_intron Mus_musculus 0 291

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