C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gastrulation brain homeo box 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000015333 gbx2-001 ENSDARG00000002933 7955 + 6:15948991-15952088 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000015333
Transcript ID Brain Heart Kidney Muscle
ENSDART00000015333 1.756±0.49 0.087±0.00 0.308±0.25 0.162±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0030902 IMP hindbrain development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036954 Gbx2-001 protein_coding Mus_musculus 0 220
ENSMUST00000101395 Hoxa4-001 protein_coding Mus_musculus 0.0000006 60
ENST00000243103 HOXC12-001 protein_coding Homo_sapiens 0.000005 58
ENST00000297537 GBX1-001 protein_coding Homo_sapiens 0 193
ENST00000306318 GBX2-001 protein_coding Homo_sapiens 0 207
ENST00000360046 HOXA4-001 protein_coding Homo_sapiens 0.00003 55
ENST00000428284 HOXA4-201 protein_coding Homo_sapiens 0.00003 55
ENST00000511914 HOXA4-004 protein_coding Homo_sapiens 0.00002 55
ENST00000551105 GBX2-003 protein_coding Homo_sapiens 0 207
ENST00000610970 HOXA4-202 protein_coding Homo_sapiens 0.00003 55

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