C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000299166 NDUFB8-005 ENSG00000166136 9606 - 10:100523740-100529864 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299166
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299166 98.090±0.00 160.945±0.00 12.145±0.00 153.317±59.38 124.483±0.00 109.776±70.50 90.729±58.53 107.336±68.80 70.003±36.76 50.896±37.82 47.134±1.26 128.575±67.11 111.180±25.53 132.320±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QB CIL_0007QB_0001 VISTA 10:100185085-100786577
CIL_00082U CIL_00082U_0001 VISTA 10:100312457-100914449
CIL_00082V CIL_00082V_0001 VISTA 10:100315129-100915721
CIL_00093R CIL_00093R_0001 VISTA 10:100355158-100955821
CIL_00093O CIL_00093O_0001 VISTA 10:100359362-100959974
CIL_0008BC CIL_0008BC_0001 VISTA 10:100387324-100989228
CIL_0001CC CIL_0001CC_0002 CGP 10:100486642-100529881
CIL_0008BD CIL_0008BD_0001 VISTA 10:100486833-101088338
CIL_0007U1 CIL_0007U1_0001 VISTA 10:100491715-101092615
CIL_0005DQ CIL_0005DQ_0001 CGP 10:100523740-100559998

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003954 IEA NADH dehydrogenase activity
GO:0005739 IEA mitochondrion
GO:0005743 TAS mitochondrial inner membrane
GO:0005747 IDA:IEA mitochondrial respiratory chain complex I
GO:0005783 IDA endoplasmic reticulum
GO:0006120 NAS:IEA mitochondrial electron transport, NADH to ubiquinone
GO:0008137 IEA:NAS NADH dehydrogenase (ubiquinone) activity
GO:0016021 IEA integral component of membrane
GO:0022904 TAS respiratory electron transport chain
GO:0044237 TAS cellular metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026222 Ndufb8-001 protein_coding Mus_musculus 0 599
ENSMUST00000168083 Ndufb8-005 nonsense_mediated_decay Mus_musculus 0 484
ENSMUST00000171415 Ndufb8-002 protein_coding Mus_musculus 0 477
ENSMUST00000190841 RP23-466P2.2-002 processed_transcript Mus_musculus 0 399
ENSMUST00000186274 RP23-466P2.2-001 transcribed_processed_pseudogene Mus_musculus 0 348
ENSMUST00000169304 Ndufb8-009 protein_coding Mus_musculus 0 324
ENSMUST00000169181 Ndufb8-007 retained_intron Mus_musculus 0 318
ENSMUST00000167027 Ndufb8-006 protein_coding Mus_musculus 0 281

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