C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gasdermin A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000301659 GSDMA-001 ENSG00000167914 9606 + 17:39962973-39977766 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartLiverOvaryPlacentaTestisENST00000301659
Transcript ID Adrenal Breast Colon Heart Liver Ovary Placenta Testis
ENST00000301659 0.481±0.00 0.258±0.00 0.099±0.00 0.079±0.00 0.097±0.00 0.453±0.19 0.230±0.00 0.140±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WH CIL_0007WH_0001 VISTA 17:39374871-39978277
CIL_00098Y CIL_00098Y_0001 VISTA 17:39768583-40372873
CIL_0002PR CIL_0002PR_0001 CGP 17:39962973-39997960

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006915 IDA apoptotic process
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017348 Gsdma-001 protein_coding Mus_musculus 0 1465
ENSMUST00000093938 Gsdma2-001 protein_coding Mus_musculus 0 1037
ENSMUST00000107508 Gsdma3-002 protein_coding Mus_musculus 0 968
ENSMUST00000017355 Gsdma2-002 protein_coding Mus_musculus 0 551
ENSMUST00000073295 Gsdma3-001 protein_coding Mus_musculus 0 544
ENSMUST00000127692 Gsdma2-003 processed_transcript Mus_musculus 0 405
ENSMUST00000138686 Gsdma2-005 processed_transcript Mus_musculus 0 289
ENSMUST00000136111 Gsdma2-006 processed_transcript Mus_musculus 1.4013e-45 189
ENSMUST00000129186 Gsdma2-007 processed_transcript Mus_musculus 6e-33 147

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