C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000303460 HOXC10-001 ENSG00000180818 9606 + 12:53985186-53990279 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderKidneyLiverMuscleOvaryPlacentaTestisENST00000303460
Transcript ID Adipose Adrenal Bladder Kidney Liver Muscle Ovary Placenta Testis
ENST00000303460 9.304±0.00 3.844±0.00 1.392±0.00 12.032±0.00 0.094±0.00 69.754±0.00 3.294±0.00 2.317±0.00 3.845±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_00003G CIL_00003G_0001 CGP 12:53973126-53990279

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0003677 IEA DNA binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008284 TAS positive regulation of cell proliferation
GO:0009952 IEA anterior/posterior pattern specification
GO:0009954 IEA proximal/distal pattern formation
GO:0019907 IDA cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0021520 IEA spinal cord motor neuron cell fate specification
GO:0030326 IEA embryonic limb morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0050905 IEA neuromuscular process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001699 Hoxc10-001 protein_coding Mus_musculus 0 2477
ENSMUST00000174869 Hoxc5-002 processed_transcript Mus_musculus 0 217

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