C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_00003G_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000123388-ENSG00000180818 CGP 9606 12:53973126-53990279
GeneTranscriptPositionBiotype
ENSG00000123388 (HOXC11)
homeobox C11
ENST00000243082 (HOXC11-002) 53973128-53976419 protein_coding
ENST00000546378 (HOXC11-001) 53973126-53977643 protein_coding
ENSG00000180818 (HOXC10)
homeobox C10
ENST00000303460 (HOXC10-001) 53985186-53990279 protein_coding
ENST00000511575 (HOXC10-003) 53986132-53989993 processed_transcript
ENST00000513413 (HOXC10-005) 53986430-53989710 processed_transcript
ENST00000514415 (HOXC10-004) 53986338-53989675 processed_transcript
ENST00000515593 (HOXC10-002) 53985065-53985977 protein_coding
ENSG00000228630 (HOTAIR)
HOX transcript antisense RNA
ENST00000424518 (HOTAIR-001) 53962308-53974956 antisense
ENST00000425595 (HOTAIR-005) 53963802-53966630 antisense
ENST00000439545 (HOTAIR-003) 53964085-53968914 antisense
ENST00000453875 (HOTAIR-004) 53963901-53967355 antisense
ENST00000455246 (HOTAIR-002) 53963749-53974947 antisense
CIL_00003G_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000001656-ENSMUSG00000022484 CGP 10090 15:102954427-102971893
GeneTranscriptPositionBiotype
ENSMUSG00000001656 (Hoxc11)
homeobox C11
ENSMUST00000001701 (Hoxc11-001) 102954427-102957708 protein_coding
ENSMUSG00000022484 (Hoxc10)
homeobox C10
ENSMUST00000001699 (Hoxc10-001) 102966796-102971893 protein_coding
ENSMUSG00000022485 (Hoxc5)
homeobox C5
ENSMUST00000001709 (Hoxc5-001) 103013815-103017429 protein_coding
ENSMUST00000174869 (Hoxc5-002) 102967443-103015676 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00003G_0001ENSG00000123388ENST00000243082ENST00000546378ENSG00000180818ENST00000303460ENST00000511575ENST00000513413ENST00000514415ENST00000515593ENSG00000228630ENST00000424518ENST00000425595ENST00000439545ENST00000453875ENST00000455246CIL_00003G_0002ENSMUSG00000001656ENSMUST00000001701ENSMUSG00000022484ENSMUST00000001699ENSMUSG00000022485ENSMUST00000001709ENSMUST00000174869
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00003G_0001ENSG00000123388ENST00000243082ENST00000546378ENSG00000180818ENST00000303460ENST00000511575ENST00000514415ENST00000515593ENSG00000228630ENST00000424518ENST00000425595ENST00000439545ENST00000453875ENST00000455246CIL_00003G_0002ENSMUSG00000001656ENSMUST00000001701ENSMUSG00000022484ENSMUST00000001699ENSMUSG00000022485ENSMUST00000001709ENSMUST00000174869
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000123388 ENST00000243082 1.392±0.00 0.828±0.00 N/A 0.014±0.00 0.125±0.00 0.101±0.00 N/A 0.616±0.00 N/A N/A 0.683±0.00 2.260±2.64 0.395±0.21 0.765±0.30
ENST00000546378 N/A 0.063±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A
ENSG00000180818 ENST00000303460 9.304±0.00 3.844±0.00 1.392±0.00 N/A N/A N/A N/A 12.032±0.00 0.094±0.00 N/A 69.754±0.00 3.294±0.00 2.317±0.00 3.845±0.00
ENST00000511575 N/A 7.711±0.00 N/A N/A N/A N/A N/A 21.194±0.00 N/A N/A N/A 3.676±1.71 N/A N/A
ENST00000513413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514415 N/A N/A N/A N/A N/A N/A N/A N/A 0.741±0.00 N/A N/A N/A N/A N/A
ENST00000515593 N/A N/A N/A N/A N/A N/A N/A 0.193±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000228630 ENST00000424518 N/A N/A N/A N/A 0.045±0.00 0.054±0.00 N/A N/A N/A N/A 0.017±0.00 0.206±0.03 0.085±0.00 1.916±1.40
ENST00000425595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.186±0.00 N/A N/A N/A
ENST00000439545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.143±0.00 N/A
ENST00000453875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.068±0.00 0.106±0.00 N/A
ENST00000455246 N/A N/A N/A N/A N/A N/A N/A N/A 0.724±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001656 ENSMUST00000001701 0.497±0.31 N/A 1.309±0.02 N/A 0.117±0.05 0.030±0.01 N/A 0.120±0.04 N/A N/A 2.842±0.46 0.049±0.03 0.090±0.06 0.024±0.01
ENSMUSG00000022484 ENSMUST00000001699 5.976±3.75 N/A 1.190±0.17 N/A 3.582±1.94 0.130±0.14 N/A 7.024±0.67 0.047±0.05 N/A 32.791±0.97 1.860±0.56 0.390±0.19 0.127±0.08
ENSMUSG00000022485 ENSMUST00000001709 3.474±2.36 4.226±0.93 0.413±0.00 1.292±0.97 3.024±0.49 0.044±0.01 0.071±0.04 1.042±0.10 0.046±0.04 0.579±0.32 N/A 3.938±1.66 0.144±0.12 0.094±0.06
ENSMUST00000174869 N/A N/A N/A N/A N/A 0.080±0.00 N/A N/A 0.036±0.00 N/A N/A N/A 0.225±0.00 N/A

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