C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001699 Hoxc10-001 ENSMUSG00000022484 10090 + 15:102966796-102971893 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000001699
Transcript ID Adipose Bladder Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000001699 5.976±3.75 1.190±0.17 3.582±1.94 0.130±0.14 7.024±0.67 0.047±0.05 32.791±0.97 1.860±0.56 0.390±0.19 0.127±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964
CIL_00003G CIL_00003G_0002 CGP 15:102954427-102971893

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IGI skeletal system development
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0009954 IGI proximal/distal pattern formation
GO:0019907 IEA cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0021520 IGI spinal cord motor neuron cell fate specification
GO:0030326 IGI embryonic limb morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0050905 IGI neuromuscular process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303460 HOXC10-001 protein_coding Homo_sapiens 0 2477
ENST00000511575 HOXC10-003 processed_transcript Homo_sapiens 0 998
ENST00000513209 RP11-834C11.12-001 protein_coding Homo_sapiens 0 217
ENST00000513413 HOXC10-005 processed_transcript Homo_sapiens 0 776
ENST00000514415 HOXC10-004 processed_transcript Homo_sapiens 0 734
ENST00000515593 HOXC10-002 protein_coding Homo_sapiens 0 737

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