C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain binding 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000304523 LDB2-001 ENSG00000169744 9606 - 4:16501541-16898809 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverLungOvaryENST00000304523
Transcript ID Adipose Brain Breast Colon Heart Liver Lung Ovary
ENST00000304523 5.932±0.00 7.864±2.69 1.949±0.00 3.606±0.00 1.458±0.78 1.016±0.00 17.286±0.00 1.128±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033W CIL_00033W_0003 CGP 4:16160505-16898809
CIL_00033T CIL_00033T_0002 CGP 4:16501541-17512234

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000989 IEA transcription factor binding transcription factor activity
GO:0001942 IEA hair follicle development
GO:0003712 IEA transcription cofactor activity
GO:0005515 IEA protein binding
GO:0005634 IEA:IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0010669 IEA epithelial structure maintenance
GO:0019899 IEA enzyme binding
GO:0030274 IEA:ISS LIM domain binding
GO:0035019 IEA somatic stem cell maintenance
GO:0044089 IEA positive regulation of cellular component biogenesis
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070748 Ldb2-201 protein_coding Mus_musculus 0 2357

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