C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain binding 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070748 Ldb2-201 ENSMUSG00000039706 10090 - 5:44472133-44799707 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070748
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070748 7.450±4.69 7.486±1.09 2.929±0.50 6.297±3.58 7.113±1.75 2.335±0.94 2.194±0.92 7.328±2.91 1.165±0.30 37.482±3.17 0.663±0.26 6.083±3.53 0.993±0.39 0.222±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033W CIL_00033W_0004 CGP 5:44175164-44799707

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000989 IPI transcription factor binding transcription factor activity
GO:0001942 IGI hair follicle development
GO:0003712 IEA transcription cofactor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005667 IDA transcription factor complex
GO:0010669 IGI epithelial structure maintenance
GO:0019899 IPI enzyme binding
GO:0030274 ISS LIM domain binding
GO:0035019 IGI somatic stem cell maintenance
GO:0044089 IGI positive regulation of cellular component biogenesis
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304523 LDB2-001 protein_coding Homo_sapiens 0 2357
ENST00000441778 LDB2-003 protein_coding Homo_sapiens 0 1417
ENST00000502640 LDB2-004 protein_coding Homo_sapiens 0 1439
ENST00000503153 LDB2-017 processed_transcript Homo_sapiens 0 671
ENST00000503829 LDB2-018 processed_transcript Homo_sapiens 0 431
ENST00000504886 LDB2-015 processed_transcript Homo_sapiens 0 468
ENST00000506732 LDB2-010 protein_coding Homo_sapiens 0 725
ENST00000507464 LDB2-005 protein_coding Homo_sapiens 0 1408
ENST00000508804 LDB2-012 retained_intron Homo_sapiens 0 540
ENST00000508918 LDB2-006 nonsense_mediated_decay Homo_sapiens 0 852
ENST00000509803 LDB2-008 retained_intron Homo_sapiens 0 854
ENST00000510825 LDB2-013 processed_transcript Homo_sapiens 0 640
ENST00000512345 LDB2-014 nonsense_mediated_decay Homo_sapiens 0 697
ENST00000513457 LDB2-011 processed_transcript Homo_sapiens 0 540
ENST00000515064 LDB2-007 protein_coding Homo_sapiens 0 2178

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