C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type III, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000304636 COL3A1-001 ENSG00000168542 9606 + 2:188974320-189012746 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000304636
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000304636 23.829±0.00 76.958±0.00 4.906±0.00 0.340±0.02 181.968±69.61 44.773±4.53 10.729±6.29 18.310±11.81 40.601±27.18 18.316±7.35 5.658±4.63 175.058±120.06 454.885±109.49 43.476±33.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004J6 CIL_0004J6_0001 CGP 2:188974320-189179879

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0001568 IEA blood vessel development
GO:0005178 NAS integrin binding
GO:0005201 IMP:IEA extracellular matrix structural constituent
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005586 NAS collagen type III trimer
GO:0005615 IDA extracellular space
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007160 IDA cell-matrix adhesion
GO:0007179 IDA transforming growth factor beta receptor signaling pathway
GO:0007229 IMP integrin-mediated signaling pathway
GO:0007411 TAS axon guidance
GO:0007507 IMP heart development
GO:0007568 IEA aging
GO:0009314 IDA response to radiation
GO:0009612 IEA response to mechanical stimulus
GO:0018149 IDA peptide cross-linking
GO:0021987 ISS cerebral cortex development
GO:0022617 TAS extracellular matrix disassembly
GO:0030168 NAS platelet activation
GO:0030198 TAS extracellular matrix organization
GO:0030199 NAS collagen fibril organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IMP extracellular matrix
GO:0034097 IDA response to cytokine
GO:0035025 ISS positive regulation of Rho protein signal transduction
GO:0042060 IDA wound healing
GO:0043206 IMP extracellular fibril organization
GO:0043588 IMP skin development
GO:0046332 IEA SMAD binding
GO:0046872 IEA metal ion binding
GO:0048407 IDA platelet-derived growth factor binding
GO:0048565 IEA digestive tract development
GO:0050777 IMP negative regulation of immune response
GO:0060414 IEA aorta smooth muscle tissue morphogenesis
GO:0071230 IEA cellular response to amino acid stimulus
GO:2001223 ISS negative regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087883 Col3a1-001 protein_coding Mus_musculus 0 5860
ENSMUST00000186021 Col3a1-007 protein_coding Mus_musculus 0 773
ENSMUST00000129611 Col3a1-002 retained_intron Mus_musculus 0 671
ENSMUST00000190943 Col3a1-005 retained_intron Mus_musculus 0 521
ENSMUST00000123204 Col3a1-003 retained_intron Mus_musculus 0 230
ENSMUST00000189818 Col3a1-004 processed_transcript Mus_musculus 0 220

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