C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exportin 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000304658 XPO6-001 ENSG00000169180 9606 - 16:28097995-28211869 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000304658
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000304658 9.325±0.00 7.225±0.00 0.974±0.00 8.806±3.00 5.638±0.74 5.734±0.63 1.993±0.94 5.655±2.80 2.278±0.74 5.573±1.22 2.469±0.00 7.905±3.15 9.438±0.41 23.876±12.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TQ CIL_0005TQ_0001 CGP 16:27787535-28211920
CIL_0005TT CIL_0005TT_0001 CGP 16:28097979-28323849

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006611 IDA protein export from nucleus
GO:0006886 IEA intracellular protein transport
GO:0008536 IEA Ran GTPase binding
GO:0008565 IDA protein transporter activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168189 Xpo6-002 protein_coding Mus_musculus 0 4844
ENSMUST00000009344 Xpo6-001 protein_coding Mus_musculus 0 4824
ENSMUST00000170675 Xpo6-003 processed_transcript Mus_musculus 0 3016
ENSMUST00000167268 Xpo6-019 retained_intron Mus_musculus 0 2883
ENSMUST00000169059 Xpo6-006 processed_transcript Mus_musculus 0 1831
ENSMUST00000168649 Xpo6-008 processed_transcript Mus_musculus 0 1002
ENSMUST00000165608 Xpo6-014 nonsense_mediated_decay Mus_musculus 0 989
ENSMUST00000164741 Xpo6-016 protein_coding Mus_musculus 0 857
ENSMUST00000167315 Xpo6-004 retained_intron Mus_musculus 0 793
ENSMUST00000168564 Xpo6-011 nonsense_mediated_decay Mus_musculus 0 547
ENSMUST00000166540 Xpo6-017 nonsense_mediated_decay Mus_musculus 0 457
ENSMUST00000168933 Xpo6-010 retained_intron Mus_musculus 0 449
ENSMUST00000166368 Xpo6-015 processed_transcript Mus_musculus 0 366
ENSDART00000109580 xpo6-201 protein_coding Danio_rerio 0 326
ENSDART00000138328 xpo6-001 protein_coding Danio_rerio 0 326
ENSMUST00000167147 Xpo6-013 nonsense_mediated_decay Mus_musculus 0 322
ENSMUST00000165660 Xpo6-009 protein_coding Mus_musculus 0 315
ENSMUST00000163959 Xpo6-007 protein_coding Mus_musculus 0 278
ENSMUST00000171861 Xpo6-005 nonsense_mediated_decay Mus_musculus 0 268
ENSMUST00000166538 Xpo6-018 nonsense_mediated_decay Mus_musculus 2e-40 172
ENSMUST00000166719 Xpo6-012 nonsense_mediated_decay Mus_musculus 8e-35 154

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