C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000074267 Rps7-201 ENSMUSG00000061477 10090 - 12:28630847-28635953 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074267
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074267 42.327±10.83 76.134±3.79 320.438±177.64 226.543±147.92 146.171±48.12 232.817±42.47 93.907±8.66 106.392±16.05 257.466±229.42 118.083±21.94 123.952±8.26 264.847±81.46 213.684±130.10 119.056±68.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EQ CIL_0008EQ_0002 VISTA 12:28516804-29118905
CIL_0003DB CIL_0003DB_0002 CGP 12:28630847-28659591

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0002181 IBA cytoplasmic translation
GO:0003735 IEA structural constituent of ribosome
GO:0005856 IEA cytoskeleton
GO:0006364 IBA rRNA processing
GO:0022627 IBA cytosolic small ribosomal subunit
GO:0030154 IMP cell differentiation
GO:0030529 ISO ribonucleoprotein complex
GO:0030686 IBA 90S preribosome
GO:0032040 IBA small-subunit processome
GO:0042274 IBA ribosomal small subunit biogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304921 RPS7-001 protein_coding Homo_sapiens 0 797
ENST00000403564 RPS7-008 protein_coding Homo_sapiens 0 797
ENST00000406376 RPS7-009 protein_coding Homo_sapiens 0 800
ENST00000407445 RPS7-005 protein_coding Homo_sapiens 0 662
ENST00000415804 RPS7P15-001 processed_pseudogene Homo_sapiens 0 569
ENST00000418311 RPS7P8-001 processed_pseudogene Homo_sapiens 0 636
ENST00000426405 RPS7P14-001 processed_pseudogene Homo_sapiens 0 630
ENST00000443360 RPS7P3-001 processed_pseudogene Homo_sapiens 0 675
ENST00000444127 RPS7P4-001 processed_pseudogene Homo_sapiens 0 691
ENST00000462576 RPS7-006 retained_intron Homo_sapiens 0 797
ENST00000463499 RPS7P7-001 processed_pseudogene Homo_sapiens 0 497
ENST00000464254 RPS7P10-001 processed_pseudogene Homo_sapiens 0 730
ENST00000472966 RPS7-004 retained_intron Homo_sapiens 0 344
ENST00000479123 RPS7-003 retained_intron Homo_sapiens 0 335
ENST00000481006 RPS7-002 retained_intron Homo_sapiens 0 198
ENST00000484240 RPS7P11-001 processed_pseudogene Homo_sapiens 0 743
ENST00000485777 RPS7P6-001 processed_pseudogene Homo_sapiens 0 523
ENST00000491937 RPS7-007 retained_intron Homo_sapiens 0 662
ENST00000571702 RPS7P1-001 processed_pseudogene Homo_sapiens 0 743
ENST00000573941 RP11-164N20.2-001 processed_pseudogene Homo_sapiens 0 187
ENST00000588553 AC005786.3-001 processed_pseudogene Homo_sapiens 0 206

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