C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SCAN domain-containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079125 Scand1-201 ENSMUSG00000046229 10090 - 2:156311847-156312704 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079125
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079125 54.818±14.91 164.858±25.10 48.827±4.25 54.780±20.68 106.251±40.10 100.665±19.32 17.840±5.86 82.970±9.28 35.197±14.55 82.540±15.72 10.018±3.13 87.266±15.44 30.234±10.10 142.586±22.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056T CIL_00056T_0002 CGP 2:156196466-156312704
CIL_0000WS CIL_0000WS_0002 CGP 2:156311847-156375638

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003713 IDA transcription coactivator activity
GO:0005634 IBA nucleus
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000305978 SCAND1-002 protein_coding Homo_sapiens 0 311
ENST00000373991 SCAND1-001 protein_coding Homo_sapiens 0 311
ENST00000615116 SCAND1-201 protein_coding Homo_sapiens 0 311

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