C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000306024 LSM3-001 ENSG00000170860 9606 + 3:14178358-14201119 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306024
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306024 8.407±0.00 10.716±0.00 1.965±0.00 8.071±0.87 7.556±3.46 6.387±3.30 5.452±2.57 7.639±1.75 3.869±0.48 5.067±2.39 4.497±0.80 10.636±8.27 18.241±11.90 27.933±10.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GU CIL_0007GU_0001 CGP 3:14145147-14201119
CIL_0007GZ CIL_0007GZ_0001 CGP 3:14178358-14489349

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005829 TAS cytosol
GO:0006397 TAS mRNA processing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040607 Lsm3-001 protein_coding Mus_musculus 0 477
ENSMUST00000126253 Lsm3-003 retained_intron Mus_musculus 0 383
ENSMUST00000123569 Lsm3-002 retained_intron Mus_musculus 0 215
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.0002 53

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